MmuEX1028433 @ mm10
Exon Skipping
Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62752577-62756454:-
Coord C1 exon
chr11:62756354-62756454
Coord A exon
chr11:62755788-62755852
Coord C2 exon
chr11:62752577-62753682
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCCTACATTCCTCTCGGCAGGAC
3' ss Score
8.55
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTAGACGAAGAAAGGGTGCAGAGCTACAACATTCCAGTTCTCCAGAATCACTAAAGTTTATTATTAATCGATCCGCCTTGTTTGTACAATCTTTAACACAG
Seq A exon
GACAGCCACCCTTTCAGAAAGCAGAAGCAGAGATGGCTGCTGGGATGTTTGCAATTGGACCCCTG
Seq C2 exon
ACTTGGAGAGAGACCAAATCTGCAACTAAGGATGCTGTGCTATCAGAGAACGGCTTTGGAAAAGATTTATCACAGAAGATCGCTGTACTGGGGGAGAAAGGCCTATGGGGCTCCAGAATGGAAGGCCTGAGAAGTGGAATGGCAGGATATGAAGACTGTGAAATATTCAAGAGCATCACCCGAGTCAGAGACTAGTAAGGAGGGAGAAGAAGCAAGCTGCTCTAAGGGGCTCCAGACTTGAAGCTTCTCTTTTCCCAGAACCAGGAATTGTCACAGAAGGACCTGGCCAACAACGCCGAACACATGAGGGAATCTCCACGAAGAATTTACATTTGATTGCAGATACCCATTTGGGGGAGGTAATCGTCAAGGATACAGAAGACAGAAAAATTATAAGGCAGACTTCATCATTTATTTTGAGGGAAAAAAATCCCAGTACTGAAAAATAAAAAACCCTATAGATGTAGGCACATGTGAAAGGGCCTTTTGTTTGAAGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342-'18-17,'18-16,19-17
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.318 C2=0.016
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATCCGCCTTGTTTGTACA
R:
TTCCACTTCTCAGGCCTTCCA
Band lengths:
173-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types