MmuEX1028432 @ mm10
Exon Skipping
Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62752577-62783761:-
Coord C1 exon
chr11:62783672-62783761
Coord A exon
chr11:62783273-62783459
Coord C2 exon
chr11:62752577-62753682
Length
187 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCTTTCTTTCAACAGTAA
3' ss Score
10.45
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GGCTTCCCATTTCCAAACCCGATAACTATAATTCGGAAGATGGAAAAGAACTGTCGAAGCTTGAGAAGTCTCCCAAGTGCAGTGACTCAG
Seq A exon
TAAAAATACATAAAAAATGTTGTTTCTATGAATTTTTACAAGTTGAACACATTCACGTAACTACTGCCTAGATCAAGAAAGAACTAGTCTCCTGAAAAGCACTCTTGTGCCCGGTGTTCAATCCCCTCTCTCCTTAGGGAGACCTTGGTAACACTGATGGTTAGTTCTGATGTCTGCTGAACCTTAT
Seq C2 exon
ACTTGGAGAGAGACCAAATCTGCAACTAAGGATGCTGTGCTATCAGAGAACGGCTTTGGAAAAGATTTATCACAGAAGATCGCTGTACTGGGGGAGAAAGGCCTATGGGGCTCCAGAATGGAAGGCCTGAGAAGTGGAATGGCAGGATATGAAGACTGTGAAATATTCAAGAGCATCACCCGAGTCAGAGACTAGTAAGGAGGGAGAAGAAGCAAGCTGCTCTAAGGGGCTCCAGACTTGAAGCTTCTCTTTTCCCAGAACCAGGAATTGTCACAGAAGGACCTGGCCAACAACGCCGAACACATGAGGGAATCTCCACGAAGAATTTACATTTGATTGCAGATACCCATTTGGGGGAGGTAATCGTCAAGGATACAGAAGACAGAAAAATTATAAGGCAGACTTCATCATTTATTTTGAGGGAAAAAAATCCCAGTACTGAAAAATAAAAAACCCTATAGATGTAGGCACATGTGAAAGGGCCTTTTGTTTGAAGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342_MULTIEX1-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000207597fB19868
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCCAAGTGCAGTGACT
R:
AGCTTGCTTCTTCTCCCTCCT
Band lengths:
242-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types