MmuINT0178931 @ mm10
Intron Retention
Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62778387-62783761:-
Coord C1 exon
chr11:62783672-62783761
Coord A exon
chr11:62780900-62783671
Coord C2 exon
chr11:62778387-62780899
Length
2772 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CATTTGCAATGTCTTTTCAGACA
3' ss Score
7.09
Exon sequences
Seq C1 exon
GGCTTCCCATTTCCAAACCCGATAACTATAATTCGGAAGATGGAAAAGAACTGTCGAAGCTTGAGAAGTCTCCCAAGTGCAGTGACTCAG
Seq A exon
GTAGGTAGGCCAATGGGGCTTCGGATGCATCAAGAGTGAACAAGTGCGCTTTTCAGAGCTTAGAGAGCGTTAGAAACGCCTGTGCACTTTGATTGTCAAAATATTTGAAAATCTGATGTTTTTAAACATATGTCAAAATAAAATAACCATCATTGAAATTAAACATTTTTTCACTCTCCTCTCCTTCCTTTCCTTTCCCTTTCTTTCAACAGTAAAAATACATAAAAAATGTTGTTTCTATGAATTTTTACAAGTTGAACACATTCACGTAACTACTGCCTAGATCAAGAAAGAACTAGTCTCCTGAAAAGCACTCTTGTGCCCGGTGTTCAATCCCCTCTCTCCTTAGGGAGACCTTGGTAACACTGATGGTTAGTTCTGATGTCTGCTGAACCTTATGTAAGTGGAATCACTGTGTGTTCTCTGAGTCCACCGTCCTTCCTTAGCTTTCCCTGTGAGATAGAGCCGTGTTGCAGCGTGTTGCTGAGATTAGCTCACTATATGTGCTCCGTAGCCTTCCATCATTTCAGTATCCCAGTTTCCCCATTCTCCCGCAGACAGGCATTTGGAGAGCTTGGGTCATATGAACACTGCTCCTGTATATATTCTTCCACATGCCTTTTGATGAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAAATGTACATATTGCCACAGAGGTTTACAAAATCTTTCCAATTATGTCTCCACTGGAAGAAGTCCCAACTTTTCCACATGTTTATCAGCAGTTAATATTATCTGTGTTTATTTTAGCCTTTTCTACAGATAAGTGATGTCTTTTGCTTTTTAAGAAATTAAAATTTTAGTGATTCCGATAAAGACCTCATTCTCCCATTCTCTAGCAATAGCCACTTTGTCTTGAAGTTGGTGTGAATTATTCTTGTATTTGCATGTACAGGTATATGTATGCACATGCATATATACATAAAAATGTATACTTTATTGCTACAGTTTTTCTGTGATCATTTTTAAGCTCCACTATTTCATTTTGTTATCAGTCTATATTAATATGTAATGAATTCTACATTTTTTCTTTCAAACAATACAGAGTGTGGAGGCAGTGATATATCGTGTGGATAAACTGGACAGTTTGCTTTTACATGCTGGCCGTTAGCAGAGCTGCGTGATTATCTTTTACTTGTGTTCCTCTTGAGAACTGACCTTAAAGTAGATGCCTGGAAGAAGATATATGGGCCTTAAAGTATCACATACTGGTTTATTGGCCACCAGTTGACTCAGTGGCTCTTGTTCATCTTGTAAAAAATGCCACTTCGTGTTCATTTGCGTTTCTCCGAGTGCTAAGTCTGAACCGAGTGAGCACTTGTGATTATTGCCTATTCAAGGTTTCTTGACTTGTTGGAGCTGTTTGTGTACTTTAGACCCTAATGCTTGATGGTGGTGGTGTTACAAAATGAGGAGGAATAGAGTCTTCCAGTTTGGGGTATATTTAATAGCCCCAAAGTTAGTAAACTTTCAAATTTCAAGGTCAGAGTTACTGATTTTTTTCATTTCTAGGGTTGGTACCCAAAGCCTTGTGCAGATTTGGCAAGCACTCTATCCTCGAGTTGCATCCCCCACTCTTACTAATTGCTTTAAGATTTCATCTTAGGGGTCGAAGAGATGGCTCAGAAGTTCAGGATACATATTTTCTTGTTGAGGACCTGAGTTTGATTCTCAGCACCCCTGTCAGGCAGCTTACAGCTGCCTGTGACTCCAAGCTCCAGGAGATCCAAGGCCTCTGGCCACTGTGGGCATCTGACTCACACATACATATCCACACATAGACACAGACACACACACTATTAAAATAATTTTTAAAAAACATCTATTTTTACTTTACGTGTATGAGTGTGGGCATGGCGAGAGGGTTGCATCCCCTAGTACTGAAATAACAGAGCATTTTGAACCTCCCTGTGGATCCTGAGAATTGAACCTGGGTCCTCTACCATAACAGCAAGTGCCCTTAACCCTTGAGCCATCTCTCCAGCCCCAGCCCTTACTAATTTATCTGTTGTAAATTGTTGTGTTCTACTGATGTCAGAAAGGTAATCTGAATTTTATTACAAAATAATCCAGTTTTGTCATGCAGGTATTTATTTTTGGAAATGATGTGAAACGTATCTTTTCCATACTCACAGCCTATAATCCAGCATCATTGACTAAGTAATCTTTTGCCACTGGTTTGTGATGCTACCTTTAGGAGAGCCCACTTCCCTTATAGATATTTGAATTTCTTTCTAGACTTATTTGTCCGTGTTTTAGTAGCATACTATTTTAGTTACTATACTAAACAGTACTTATAATAGCATAGTATTATACTGTTGTTATACTACATCTTAGTAAATTATACATACTTAGCTATACATATCTGTGTGTGTAAATTCCTGGCTCTTTATCATAGCAGAAGTTATTCTATACAGTGTGGGTTTCCTATCCAGCTCTAACGCACTCATTGCCTGCTCCTCTGCTGACACTTTTGTTTCCATCTTTTTCCCTCCTTGCGTTATATTTCTGATCCCCTTTCTCCCCTCCGATTCTCCTGGATAAAGCTATTCGTCTTCATATTCATCCCCCTCGATTTCCTTCTTATTTTACAAACCATCCAGTAAGAGCGTCAGATCTCCTAACTCCACAAAGGCATGCTTCCATCTTGATTCATCTTCACCTGTTATAGGACTGTGTTACTGTTGAGCACAGAAAACAAAGAACATGTGCATTTGCAATGTCTTTTCAG
Seq C2 exon
ACATGGAAACCAGACCTGAGAGCAAGGAGTCAACTTCAGTGCTAGACTTTTCCAAAGAAGAGTCAAACAGACTGACAGAAAATACTGCTTCTGACTCCGACATTGAAACTGCTCTTGAATGTGAGCGTTGGCTAGAACATCGTCAAAGAAATCGGGAGAGGTACCCAAGACAAATGTCTGCTCACAGGAACTCCCTCCCTGCGCAAGAAGATGGTGAACGTGATGTATATTGGAAAAGCTTCAGTCAGAAACCTCTCCTTACAACTGATGACAGAGACCCCAAAGGATCCTGGGACGTTCACACGCTTGGGAAAAGACTGAAGCAGAAATCAAAGTTAATGACAAAGCAGAGACCTTATAAAGAGAAAAAACCTCATAAGTGTGATGAGTGTGGCGAACTCTTCACTTACCGTTCGGTACTTATCCGACACCAGAGAGTTCACACTGGAGAGAAACCTTATACCTGCAGTGAGTGCGGGAAGTCCTTCAGCCACAGAGCCAATCTGACTAAGCACCAGAGAACCCACACTAGGATTCTCTTCGAGTGTGGCGAGTGCAAGAAAACCTTCATAGAAAGTTCATCCCTTGAGGTACATCAGAGAATCCACATCGGGGAGAGACCTTACGAATGCGCCGAGTGTGGGAAAGGCTTCAACCGAAGTACACACCTTGCCCAGCATCAGCTGATTCATACTGGGGTGAAGCCTTATGAATGTAACGAATGTGACAAAGCTTTCATTCACTCATCAGCTCTCATTAAGCATCAAAGAACTCATACTGGAGAGAAGCCCTATAAATGTCAAGACTGTGGGAAAGCCTTCAGCCACTGCTCATCTCTTACGAAGCACCAGAGGGTTCACACGGGGGAAAGGCCATATGAGTGCAGTGAGTGTGGGAAGACTTTCAGTCAGAGCACGCACCTTGTTCAGCACCAGAGAATCCACACTGGAGAAAAGCCCTACGAATGTAACGAATGTGGGAAAACATTCAGCCGGAGCTCAAATTTTGCAAAGCATCAAAGAATTCACATGGGAAAGAAACCCTATAAATGTGGAGAATGTGGCAAAGCCTTCGTTCATTCGTCAGCTCTTATTCAACACCAGAGAACTCACACTGGGGAGAAGCCTTTCAGGTGTACCGAGTGTGGGAAAAGCTTCAAGAGCAGCCCCTCCCTCATCCGACATCAAAGAACTCACACTGAAGAGCAGCCCTGAGAGGTGCTGAGTGTTAGGTGAAGGTTGGCTTTATTGCTGCGTTTCATATTTGATTGTTGAAATAGAGAGACCATAATATGACCCTGGGGTGTGTCTGTGTGTGTATGATTTCACTTGCCCTGTGTATAACTCTGAACAGCAGAAAGGAGATCCCTTCTACCCATTGGCTTGATAATAGTGAAGCCCTCTGGCTAGAGTTCTCAAAATTTTTGTTCCCAGTTTTCCAAATGCCAGATTTTAAATTCAAGAAATGTTTGGGAGACAGTAAAACTGTGACCATTGTGAAATCTGGTTTCGCTGTGCTTAGTCCCAGCAGGGACTGCTGAAGCCTCTCGTTCAGTAAGGAAATCTTTTGCAGATTAGGCTTGAGACATACAGCCGTATCCTCGGGAAGACACAGCTGAGTTACTCTAAACTCAGAGACAGACACCCACCATGTGTATTGTTTCCTTCGAGAGTAATTTCTGTATTAAAAAGTAAAGGAAGGTTGATAGATGAAAACTGCTTAGAATTCCATCCCCCACAAAGAGTGCTATCTAACTTGATGAACTTAACTAAATGCACTTATAAAAGGTTCTAGATTGGGTTTACATGAACTGTATTGGTCATTGACTCACATAAATGGCATTGCTATGCTTTTGTTTTGAAGATTCTCTAGTTCCCTTGGATCTACCCTACGGCACCTAACAGATGGGAGTCTTGTCTTTCTGTGCCAAGGTCCTCTTTTCTCATCTTTGCCATCCATAGAGCCCTTGGCTTTCTATAATCAGATCATCAAGGAGAGTTTATTTCGATAGATTATTCAGTGTTTGGTGAAGTGTGCCCTGTGAATTTTAGAAAGCCCTCTGGGTGTGTTGCAGTTTGAACATATCTGAAAGGTTGATAAGGGTGAATGTATTATTTGATTTTGGGTCCCAGTCAAGAACGCTGAAGCAACTCTGTGGCAGCCTGGCATGCTCTCGAGTATGTAAAAAGCTCACAGGACAGCCCTGAAGTGACTACCCACGGATAAACATCTTTTTCCTCCACTTACCTGGCTTTCATGCTTGCTCACATTATTTTATTATTCTTATCTTCCATACATTAGTTGGCCTTTATCCCTGACCTCTAATGTAAACACACCATGAAATCATAGTGATCTATTATTAGTAGTAATGGATGTGAACAAAAGCCATTGAGAGGATGGGAAACACAAAACAAAAGCTCAAGTAACTATTGAGTAAAACAATACACAGTGCCAGCTTTTTATTATTCTATTCTGTATTAGTTTATACGGGAATAAAATTATAGGAAAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342:ENSMUST00000054654:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.287
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types