Special

MmuINT0178931 @ mm9

Intron Retention

Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62591889-62597263:-
Coord C1 exon
chr11:62597174-62597263
Coord A exon
chr11:62594402-62597173
Coord C2 exon
chr11:62591889-62594401
Length
2772 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CATTTGCAATGTCTTTTCAGACA
3' ss Score
7.09
Exon sequences
Seq C1 exon
GGCTTCCCATTTCCAAACCCGATAACTATAATTCGGAAGATGGAAAAGAACTGTCGAAGCTTGAGAAGTCTCCCAAGTGCAGTGACTCAG
Seq A exon
GTAGGTAGGCCAATGGGGCTTCGGATGCATCAAGAGTGAACAAGTGCGCTTTTCAGAGCTTAGAGAGCGTTAGAAACGCCTGTGCACTTTGATTGTCAAAATATTTGAAAATCTGATGTTTTTAAACATATGTCAAAATAAAATAACCATCATTGAAATTAAACATTTTTTCACTCTCCTCTCCTTCCTTTCCTTTCCCTTTCTTTCAACAGTAAAAATACATAAAAAATGTTGTTTCTATGAATTTTTACAAGTTGAACACATTCACGTAACTACTGCCTAGATCAAGAAAGAACTAGTCTCCTGAAAAGCACTCTTGTGCCCGGTGTTCAATCCCCTCTCTCCTTAGGGAGACCTTGGTAACACTGATGGTTAGTTCTGATGTCTGCTGAACCTTATGTAAGTGGAATCACTGTGTGTTCTCTGAGTCCACCGTCCTTCCTTAGCTTTCCCTGTGAGATAGAGCCGTGTTGCAGCGTGTTGCTGAGATTAGCTCACTATATGTGCTCCGTAGCCTTCCATCATTTCAGTATCCCAGTTTCCCCATTCTCCCGCAGACAGGCATTTGGAGAGCTTGGGTCATATGAACACTGCTCCTGTATATATTCTTCCACATGCCTTTTGATGAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAAATGTACATATTGCCACAGAGGTTTACAAAATCTTTCCAATTATGTCTCCACTGGAAGAAGTCCCAACTTTTCCACATGTTTATCAGCAGTTAATATTATCTGTGTTTATTTTAGCCTTTTCTACAGATAAGTGATGTCTTTTGCTTTTTAAGAAATTAAAATTTTAGTGATTCCGATAAAGACCTCATTCTCCCATTCTCTAGCAATAGCCACTTTGTCTTGAAGTTGGTGTGAATTATTCTTGTATTTGCATGTACAGGTATATGTATGCACATGCATATATACATAAAAATGTATACTTTATTGCTACAGTTTTTCTGTGATCATTTTTAAGCTCCACTATTTCATTTTGTTATCAGTCTATATTAATATGTAATGAATTCTACATTTTTTCTTTCAAACAATACAGAGTGTGGAGGCAGTGATATATCGTGTGGATAAACTGGACAGTTTGCTTTTACATGCTGGCCGTTAGCAGAGCTGCGTGATTATCTTTTACTTGTGTTCCTCTTGAGAACTGACCTTAAAGTAGATGCCTGGAAGAAGATATATGGGCCTTAAAGTATCACATACTGGTTTATTGGCCACCAGTTGACTCAGTGGCTCTTGTTCATCTTGTAAAAAATGCCACTTCGTGTTCATTTGCGTTTCTCCGAGTGCTAAGTCTGAACCGAGTGAGCACTTGTGATTATTGCCTATTCAAGGTTTCTTGACTTGTTGGAGCTGTTTGTGTACTTTAGACCCTAATGCTTGATGGTGGTGGTGTTACAAAATGAGGAGGAATAGAGTCTTCCAGTTTGGGGTATATTTAATAGCCCCAAAGTTAGTAAACTTTCAAATTTCAAGGTCAGAGTTACTGATTTTTTTCATTTCTAGGGTTGGTACCCAAAGCCTTGTGCAGATTTGGCAAGCACTCTATCCTCGAGTTGCATCCCCCACTCTTACTAATTGCTTTAAGATTTCATCTTAGGGGTCGAAGAGATGGCTCAGAAGTTCAGGATACATATTTTCTTGTTGAGGACCTGAGTTTGATTCTCAGCACCCCTGTCAGGCAGCTTACAGCTGCCTGTGACTCCAAGCTCCAGGAGATCCAAGGCCTCTGGCCACTGTGGGCATCTGACTCACACATACATATCCACACATAGACACAGACACACACACTATTAAAATAATTTTTAAAAAACATCTATTTTTACTTTACGTGTATGAGTGTGGGCATGGCGAGAGGGTTGCATCCCCTAGTACTGAAATAACAGAGCATTTTGAACCTCCCTGTGGATCCTGAGAATTGAACCTGGGTCCTCTACCATAACAGCAAGTGCCCTTAACCCTTGAGCCATCTCTCCAGCCCCAGCCCTTACTAATTTATCTGTTGTAAATTGTTGTGTTCTACTGATGTCAGAAAGGTAATCTGAATTTTATTACAAAATAATCCAGTTTTGTCATGCAGGTATTTATTTTTGGAAATGATGTGAAACGTATCTTTTCCATACTCACAGCCTATAATCCAGCATCATTGACTAAGTAATCTTTTGCCACTGGTTTGTGATGCTACCTTTAGGAGAGCCCACTTCCCTTATAGATATTTGAATTTCTTTCTAGACTTATTTGTCCGTGTTTTAGTAGCATACTATTTTAGTTACTATACTAAACAGTACTTATAATAGCATAGTATTATACTGTTGTTATACTACATCTTAGTAAATTATACATACTTAGCTATACATATCTGTGTGTGTAAATTCCTGGCTCTTTATCATAGCAGAAGTTATTCTATACAGTGTGGGTTTCCTATCCAGCTCTAACGCACTCATTGCCTGCTCCTCTGCTGACACTTTTGTTTCCATCTTTTTCCCTCCTTGCGTTATATTTCTGATCCCCTTTCTCCCCTCCGATTCTCCTGGATAAAGCTATTCGTCTTCATATTCATCCCCCTCGATTTCCTTCTTATTTTACAAACCATCCAGTAAGAGCGTCAGATCTCCTAACTCCACAAAGGCATGCTTCCATCTTGATTCATCTTCACCTGTTATAGGACTGTGTTACTGTTGAGCACAGAAAACAAAGAACATGTGCATTTGCAATGTCTTTTCAG
Seq C2 exon
ACATGGAAACCAGACCTGAGAGCAAGGAGTCAACTTCAGTGCTAGACTTTTCCAAAGAAGAGTCAAACAGACTGACAGAAAATACTGCTTCTGACTCCGACATTGAAACTGCTCTTGAATGTGAGCGTTGGCTAGAACATCGTCAAAGAAATCGGGAGAGGTACCCAAGACAAATGTCTGCTCACAGGAACTCCCTCCCTGCGCAAGAAGATGGTGAACGTGATGTATATTGGAAAAGCTTCAGTCAGAAACCTCTCCTTACAACTGATGACAGAGACCCCAAAGGATCCTGGGACGTTCACACGCTTGGGAAAAGACTGAAGCAGAAATCAAAGTTAATGACAAAGCAGAGACCTTATAAAGAGAAAAAACCTCATAAGTGTGATGAGTGTGGCGAACTCTTCACTTACCGTTCGGTACTTATCCGACACCAGAGAGTTCACACTGGAGAGAAACCTTATACCTGCAGTGAGTGCGGGAAGTCCTTCAGCCACAGAGCCAATCTGACTAAGCACCAGAGAACCCACACTAGGATTCTCTTCGAGTGTGGCGAGTGCAAGAAAACCTTCATAGAAAGTTCATCCCTTGAGGTACATCAGAGAATCCACATCGGGGAGAGACCTTACGAATGCGCCGAGTGTGGGAAAGGCTTCAACCGAAGTACACACCTTGCCCAGCATCAGCTGATTCATACTGGGGTGAAGCCTTATGAATGTAACGAATGTGACAAAGCTTTCATTCACTCATCAGCTCTCATTAAGCATCAAAGAACTCATACTGGAGAGAAGCCCTATAAATGTCAAGACTGTGGGAAAGCCTTCAGCCACTGCTCATCTCTTACGAAGCACCAGAGGGTTCACACGGGGGAAAGGCCATATGAGTGCAGTGAGTGTGGGAAGACTTTCAGTCAGAGCACGCACCTTGTTCAGCACCAGAGAATCCACACTGGAGAAAAGCCCTACGAATGTAACGAATGTGGGAAAACATTCAGCCGGAGCTCAAATTTTGCAAAGCATCAAAGAATTCACATGGGAAAGAAACCCTATAAATGTGGAGAATGTGGCAAAGCCTTCGTTCATTCGTCAGCTCTTATTCAACACCAGAGAACTCACACTGGGGAGAAGCCTTTCAGGTGTACCGAGTGTGGGAAAAGCTTCAAGAGCAGCCCCTCCCTCATCCGACATCAAAGAACTCACACTGAAGAGCAGCCCTGAGAGGTGCTGAGTGTTAGGTGAAGGTTGGCTTTATTGCTGCGTTTCATATTTGATTGTTGAAATAGAGAGACCATAATATGACCCTGGGGTGTGTCTGTGTGTGTATGATTTCACTTGCCCTGTGTATAACTCTGAACAGCAGAAAGGAGATCCCTTCTACCCATTGGCTTGATAATAGTGAAGCCCTCTGGCTAGAGTTCTCAAAATTTTTGTTCCCAGTTTTCCAAATGCCAGATTTTAAATTCAAGAAATGTTTGGGAGACAGTAAAACTGTGACCATTGTGAAATCTGGTTTCGCTGTGCTTAGTCCCAGCAGGGACTGCTGAAGCCTCTCGTTCAGTAAGGAAATCTTTTGCAGATTAGGCTTGAGACATACAGCCGTATCCTCGGGAAGACACAGCTGAGTTACTCTAAACTCAGAGACAGACACCCACCATGTGTATTGTTTCCTTCGAGAGTAATTTCTGTATTAAAAAGTAAAGGAAGGTTGATAGATGAAAACTGCTTAGAATTCCATCCCCCACAAAGAGTGCTATCTAACTTGATGAACTTAACTAAATGCACTTATAAAAGGTTCTAGATTGGGTTTACATGAACTGTATTGGTCATTGACTCACATAAATGGCATTGCTATGCTTTTGTTTTGAAGATTCTCTAGTTCCCTTGGATCTACCCTACGGCACCTAACAGATGGGAGTCTTGTCTTTCTGTGCCAAGGTCCTCTTTTCTCATCTTTGCCATCCATAGAGCCCTTGGCTTTCTATAATCAGATCATCAAGGAGAGTTTATTTCGATAGATTATTCAGTGTTTGGTGAAGTGTGCCCTGTGAATTTTAGAAAGCCCTCTGGGTGTGTTGCAGTTTGAACATATCTGAAAGGTTGATAAGGGTGAATGTATTATTTGATTTTGGGTCCCAGTCAAGAACGCTGAAGCAACTCTGTGGCAGCCTGGCATGCTCTCGAGTATGTAAAAAGCTCACAGGACAGCCCTGAAGTGACTACCCACGGATAAACATCTTTTTCCTCCACTTACCTGGCTTTCATGCTTGCTCACATTATTTTATTATTCTTATCTTCCATACATTAGTTGGCCTTTATCCCTGACCTCTAATGTAAACACACCATGAAATCATAGTGATCTATTATTAGTAGTAATGGATGTGAACAAAAGCCATTGAGAGGATGGGAAACACAAAACAAAAGCTCAAGTAACTATTGAGTAAAACAATACACAGTGCCAGCTTTTTATTATTCTATTCTGTATTAGTTTATACGGGAATAAAATTATAGGAAAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342-Zfp286:NM_138949:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.581 A=NA C2=0.287
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000055517





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000131314
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr17:15708248-15716058 
ALTERNATIVE
HsaINT0186775
(ZNF286A)
Human
(hg19)
chr17:15611562-15619372 
HsaINT0186775
Rat
(rn6)
chr10:49188383-49191218 
ALTERNATIVE
RnoINT0168000
(Zfp286a)
Cow
(bosTau6)
chr19:33679505-33683773 
ALTERNATIVE
BtaINT0165217
(ZNF286A)
Chicken
(galGal4)
chr1:60057600-60057758 
GgaINT1030719
(ZSCAN2)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"