BtaINT0165217 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000943 | ZNF286A
Description
Bos taurus zinc finger protein 286A (ZNF286A), mRNA. [Source:RefSeq mRNA;Acc:NM_001110443]
Coordinates
chr19:33679412-33688126:+
Coord C1 exon
chr19:33679412-33679504
Coord A exon
chr19:33679505-33683773
Coord C2 exon
chr19:33683774-33688126
Length
4269 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACATTTCCAATTTCTTTCAGACT
3' ss Score
8.73
Exon sequences
Seq C1 exon
GGCTTCCGGTTTCCAAACCTGAGAACCACAGTTTGGAGAATGGAAAAGAACCACTGCTGCTTGAGAGAAAAGCCCCCAAAAGCAGCTGCTCAG
Seq A exon
GTGAGTCAGATAGATGGGGGTCTCCAGAAAGAACAATCCCATGGTGGTTTGTTAAGTGGTCCAGTAGTTAAGACTCCTTGCTTACAATGCAGAAGCCATGGGTCTAATCACTAGTCAAAGTACTAAGATCCTGCATGCTGTCTCTACTTGTTTATGTCAGAGATGCTACAGTACAACATGTCGAAAACTGAATGCCTGGTATGTGCCCAAATTCTCCATCCCCCTAACAGGATCCTCTTCCAATAATTATATTAATAACACTCGCTGCTTATCAAATTGTACGTCAGAAATCTGAACAATCTTTACATAACCCTTTCGCCTTTATCCAGTTCGTCCTTGTGTTTATCTGATCACTTCTAAGTATTTCCTCATCATTAACATCCCTCGTCTCCCTTTCATCTGAGGCCATCTCCCTGACTCCTGTAAACTCCTTACCCCTGTAAACTCCATTCTTCATGTGACAGTGAGTGATGTTTTCAAAATGCAAGTCTGATGGCGGTCACCCTTTTGCTTAGGACTTGTCCATGGCTTCCCGTTGCTCTTTGGATGACAGCCAAAATCCTAGAGGCCTATAGACGCTCGTAAAATCTGTACCTTACTCATAATATCCAGTCCTGCTTCATATCTACTTTCCCTCTGATTTTGTACCTTATCTTAGCAACTCTTAATGGTTTTAGCGTCATTGAACCTATTTAACTCCCCAAATTGTTGAGAATCCTAGCAAGCTTTTGTTTATGTGGGTTATATCTACCAGTAGTTACCATATTAGAAATTAAAAGTGAGAAAGATTTTAAACTATCATGATTAATTTAGAAATAACAATTATAAACCCATTGCATGTTAACACAAATAACACAATTTAAATAAAAATTATTTCTCTACAACAAAAATTATTGAAAAGAATGGCATTGTTTTACATTTTTGCAGGTCTTTTTGTATATGGCTAATAGAGGACAGCTTTGTAATTACATCTGCTTCTGAATGCAGCTTGATGTGATGCATTGTTTTGGTTGGCCTGTACGAAGAATATTGCCTCACGCCAATATTTAGTTAGAAGACATAGGAGTATTTTATAGCCTTTTGAGAAAATTTTGGCTTTTCTCTTGATTATACACCAAAATTGGGCAAGCAGTAGTTTCCTAAAGGTTAGGTGCAAGGTGCATCTGAAACCATATCCATGAACTTTTCATACTCTTAAAATCTATTGATCTTTTGGAAAATTTTGTTTACTGAGTTAGGCAGATCTTCCAAATACTGACACATTATGCAATATTTTAAAAGCACAATTTTCAGTATCACCACTGACCTTATCAGAAAAGCCTTTAAGTATTAGGAAACTATCAAGCTCTCAGTGGGAGTTAAAAGTTTTCCAAAATTCTAATTTCTGCCTAAAAGCTCACATTTTTTCAAATACTGTCAGTTGTTTTCTTTGAAATGGTAGGCTCATCTTTTTTTCAGTTCTGAGAGAATATCTGCCAGATACCCAACATAGATAACATAGTTTGCCAGTCATTCTTTCAAGTAAAAGTGCTAGTCTATTTAAAAAGGAAAAAATGACTGATTCCACAATGGATGGTTTTCCTCAAGACAAGCACCATATTTTGATATAAGTGGACTTGCATTATGAATATTTCCTATTTCATCATCTAGAATGTTAAAAAGGCGTGTAGTCAAAGTTTAATAGATTAAAATTAATTTATTAAATTAATAATGTTTCCTGTTGTTTCCATAGACATTTTTAGGTGAAACTGGCTCCCCCCCTGCTTAACTGAGAGTACACAGTAGGGGAAAATGTAACAGCTACTAGTACATCTGGTGTTTTGTCCTGATTTGTGCCTAAGTTGTGGGCAGTTTCACCACCATTACTTTTGCAACATAAATGCAAATGTCAAGACAATGAAAAAGGCCAATAAGATCCAAGTATTATTTTGAAAAGTTTTGAACCTAGAGACTCCCAGAGATCCACAGACCACACTTTGAAATCACTGCCCATACTAGCCTTATATCAATTCATATTTTACAAACAACTTATGTAGCACCTATGCTGTATCAGGGTCCTCAGTGTTTTATAAATATCCTCATTTAATGCTCCTTGAGGTAGGTGTTGTTTTTATTCTTCATGAAGCAGATACTGGTTTTGCCCCAGCTTACAGATAAGGAAGCTAAAGTAGAAAAGTTAAATAACTTGGGCCAGGTCACATGGCTGGAAGTGGCAGAGCTGGTTTTAAATTCATGCATTCTTATTTCAGAGTCCATGCTGTCAACTGCTGTGCTCTTCCTAAGTGCTGCCTCTCACCTTGGGGCTTCTGTACATATCATTTCCTCTACCTGGAAGGCTCACCTCTGCATCTGTACCTGTTACCTGCAACACTCACCTGGACCCCAGCCCCACTTGGATTTCAGCTCAGTGATTTACCTTCTCAGGGAGGACCCCACCCCCCATCCCCCTGGATTCCCCTTATAATCTTTCACAGCATCACTTGCCTTTTATTTCTTACTAAGGTGCATTTTTTATATGTATTCATGGACGTCAGACTAAATTTTTTTCTCCCCTTGTGTACATAGGTACTGTTTGTTTTTCCCCAGAGCCTAGCATATCCAATAGATAATCGTTGAATGAACAGATAGATGAGTAAATAAATGAACAAAGTTCATCTGGCTGTGTGGAATGAGACAGATCTTACTTGTCTTCTGAATGTTTAATAAGTCACAGGACCATTTGCTTTAAAAACCAATTATTTTAGTTCACTGACTGAAATTCCACCTTTGTATTGTCCTTAATTCCTTTATATACTTGATTTTGTTTCTGAAATTGCTCTTCTGTTTCATTTTTTGTTGTTTGTTATTGTTTAGTGGCTAAATCATATCTCTTTTGCGACCCCATTAACCCACCAGGCTTCTCTGTCCATGGGCTTTCCCAGGTAAGAATACTTGAGTGGGTTGCCATTTACTCCTCCAGAAGATCTTCCCAACCCAGGGATTGAACCCGTGTCTCCTTCATTTCAGACAGATTCTTCACCACTGAGCCACCTGGGAAGTCCACCTATCAAGCTACCAGACTTTTTTTTTTCTACCAGACCTTTTTTTAGGCAACCAAGAATTTATCTGGTCAAATGGATTTCACTGAACTATTTATTTATTCTTTGGAACTATACTCTTTATAAATTATTTTGGCTTTATAATTTCATATTTAACATAAAAATTCTAATAGATGTATAGTAGATATATTCAGAGAGGTTGGCTACTGTCCCTGTTCTCTTGTATTCTGTTGCTCTCTCTGTAGGTAATCTTATTTACTAGTATTTCATGTATCTGTCCTTGATTTTGGAAAATGTAACCAAGTATGTTGATAATATCTATATCTCTCAAAGTAGCAAACCAAACACACTCCTTTCTAGTTTGCTGGGGGGGTTTTTGTTTTGTTTTGTTTTTATTTATTTATTTCACTTTACAATATTGTATTGGTTTTGCCATACATTGACTTGAATCCACCATGAGTGTACATGTGTTCCCCATCCTGAGCTGGGGTTTTTTAAGTCTATTTAATGTATCCTGTAGATCACCTCCTAGCAATTATGTAGTGATCAATCTATTTTTTTAAGTTGCACATACTCCATTGTGTGTATACACCATGATTTAATCAGTTCTCTATAGTAGAATATTTGAGATGTTACCAGTTTTGCTACCTCAATTAGTGTTGTAATGTTTAGCCTTGTGCAGGTATAATTTAATATATTTGCCATTATATCTTAGGGAGGTCATAGATTTTTGAATAGAGACATTATAAATGCATTCTTAGGGGAGATTTTAAACTGAAAATGGAGTGCATAGTAGGATTGAGTAAGGCTGGGTGACTGGAAACTTAGAAGTCATCACTGTGCCTGCACCAAGGTGGTGACTGCCTGGCTGTTTCTGATAGATAGCACTTGATGTTCTGTTAGAGGCTGTTCCTCCCCTGTCCTGATCTGGGATACTCATTTCCTGCTCATCCAGCAATATAGCACTTCCTCTCCATCCCTCCTCTTGTCTTTCTGGTCATCTTTTGCCCTATTCTGCCTCCTGGGTCAGATTGTGTACTGATTTATCTGCATAACTCTGTACTTTCATTCCCCTCCATTTGCTTCTCTTTGCAAATCATCTTCCAAGAGTCAAATCCACTTCCTCATTGAAGCTGTGCCTTTCACCTTCATTAACTCTGACCCATTACAGAACTGCCATTTTGTCAAAACTCAGAAGACGAAGGAAATTTACATTTCCAATTTCTTTCAG
Seq C2 exon
ACTCGGAGACTAGTCCCAGAAGCAAGCATTCAACTTCAGTGCAAGATTTTTCCAAAGAAGAATCATGCCAGGTTGCAGTCATAGACAGGCTGACAAGGGACAGTGTCTGTGACTCCAGCACAGAAACAACTCTTGACTGTGAAGACTGGTTGGAGAATCAGCAGGGAAGTCAGGAGAGACACTGGAGAGGAATGTTCACCCACATGAATTCACTCCCAGAAGAGAGAGCCCCTGAGCACGACGTTTACTGGAAAACCCTAGGCCAGAAGTCAGTCCTTCTCACTCAAGACAGAGTTCCCAAAGGACCCTATGCTTTCCACACCCTCGAAAAAAGACTGAAACAGAAATCTACCTTAATGAAAAAGCAGAGGACCTATAAAGAAAAGAAACCTCATAAATGCAATGACTGTGGTGAACTCTTTACTTACCACTCAGTGCTTATTCGACACCAGAGGGTCCATACAGGGGAGAAGCCCTACAGCTGTGCAGACTGTGGGAAATCTTTCAGCCACAGGGCTAATTTAACCAAACATCAGAGAACTCACACAAGAATTCTCTTTGAGTGCAGTGAGTGCAAAAAAGCCTTCACCGAGAGTGCATCCCTTGCCATTCATCAGAGGATTCACATTGGAGAGAGACCGTATGAGTGTGGCGAGTGTGGGAAAGGCTTTAATCGAAGCACCCACCTTGTGCAGCACCAGCTGATCCACACGGGGGTGAAGCCCTATGAATGTAACGAGTGTGATAAAGCCTTCATTCATTCCTCAGCACTCATTAAACATCAAAGAACTCACACTGGAGAGAAACCTTACAAATGCCAGGAGTGTGGGAAAGCCTTTAGCCACTGCTCGTCGCTTACCAAACATCAGAGGGTTCACACTGGAGAAAAACCCTATGAGTGCAGCGAATGTGGAAAGACCTTCAGTCAGAGCACACATCTTGTCCAGCATCAAAGGATTCACACAGGAGAGAAACCCTACGAGTGTCACGAGTGTGGGAAAACCTTCAGCCGGAGCTCCAATTTCGCTAAACATCAAAGAATTCATATTGGCAAGAAACCATACAAATGTAACGAGTGTAGCAAAGCCTTCATTCATTCGTCAGCCCTTATTCAACACCAGAGAACTCATACTGGGGAGAAACCCTACAGGTGTAACGAGTGTGGGAAGAGCTTTAAGTGCAGTTCATCCCTCATCAGACATCAAAGGATTCACATGGAAGAGCAGCCCTGAAAAATTACTTGAGTGCAAAGGAATGTAAGTTGGTGTTATTGCTGTGTTAAATACCTGAGTGGTTTAGGAGGAAGACCCAAAAAATGCTGCCTGAGAAACAGTTCTGTGTGCATCTAATTCTACTCACATAACACAGTAGTTTTGAGCCATAAACAGAATGTTTCTTCTATCCATTGATTTGATCATTCTGAATGCTTCCAGCCAGAAATCTCAAAAGTTGATCCCTAAACCACCATCCCACTACCCATAATGCTCTTTTGTAGAAATTTAGAAAGTCCTTGGCAGTGGATAGCAATACAGTCATTGTGAAGTCCAGTTCCCCCTCTTTGTCATGCCAAAGCCTGTTACTCCATCTCACTGTGTAAGAACATCCTTATCTTGTAGGTGAGGCTGAGGGTTCATATCCTCAATTATCAGGAAGACACAGAGCTGTTTATTTTCAAATCCAAAGTGGACACCCAGCTATCTGGAAAATGTCGTTTCTTTTACATTAACTATAAAAATTTAAAGATTAGAGTTGAAATACACTCTGGCTTCCCTCCCAGCCCCAAAGGCTGCTGTCTCAATTGATGAACAAATGGGGTCTGAGTTATGCCCACATGGATTAGGCGGACACTTAGATGGTTATTACCCCTCTGCTGGGTACATCCTCACTTCACACTTCTTGGAAGTGACCTTGAGATAGAGAAAGAGTTGGAACGTTAACTGTAGTTTTTTTTCAGGTCCCTCTTTCCTTATCTTTGACATTGAATGAATCCTTGGTTTTCTGTACTACAGAATTAGGGAGATTTCACTCCTTTACCTCATTCTGCTGTGTGTAAAGTAAGTTTTGTCACTTTGAGAAAAAGCCCCTGGGATATGGAGAGTCTAGAAAGTTGACTGATTCAGTGTGCTGTTCCATTTAGAGCCCCAGGCAAGAAGAAGACCTGGAGCAAGCAGCTCCAAGGCACAAGAAATATATCCTCAGACCTCATGTTATGCACATTTTTTTATCGTCGTTCTGTGTATTGGTCTTTGTCATATCCCGGAGCCCTGGAGAAGGTAGAAAAGGCAAAGAGCCACGCTGATCTTGACATAAGTTACATGGGTGACCAAAGACCTTGTAGTGGGAGGAAACACAAAAGCAAGAGTTCAAATAAATATTTAGCAGGACACCACACAAATGTCTTGTTATAGACTTTTTAAAATTGTTACAGAGACTGAAAAGATGATTATAGAAAAGAAAGAGGAAACATTTGCAGATTTCCTCTCTCTTCTCCTAAATCCTGTCCTTGATGAACACTCAACAGCCAGCCCACGCTTTTCCCCTCCACGTTATCCCCATTACTCCTTAGAGTTCTCATCATTGCCTCCGTATACCTTAGTTCTATCATTGAGGAAAAGGAGAGGAAGAGTTTAAAGTGGGGGTAATAGAGATCAAGGTCAGGTCTAAAGCCAGCAATAATGGAAACCAAAACAATAGGAAATAGAGTGTAAAGGACTAAGGACAGGCTTTTTTTTTTTTAAATCATTTAAAGAGCTGGAACTCTTGAGAGATGAAACTAGGAGAATGGCTGACATAGGACAAAATAAAGGAGCTCAGCCCTCATCACTTGATACCTGGATTAACAACCTGAAGCAGGAATTGACAAACTGGCCTGGACCCACCACCTTGTTCTGTAAATAGTGTTTAATTGGAACTGGGCCTCACTCATTATTTACATGTCATGTGTAGCTATTTTTGTACTAAAATAGTGGAGTTAAGTAGTTAAGGCAGAGATTTCATGTCCCAGAAAGCCTAAAACACTTGCTGTTTCTCAACATCCCAGGTGTTTGAGAAGTTCGTTCATGATCTGGTGGCCAATACTTGGCTAACACAAGATTAGTGGGCTTGAATTCTGTCACCTCCACTTGGCAATTAATCATGTGACTTTAAAAAGGTACTTCTTTCTGAGCCCCAGTCTTATCTGTAGAATGGGAACAGGTCATCCCTCTCTCAAGGCTGTTGTGAGGATAAGACTGCAGGTAGAGAATCTGGCACACAATTACTCTTTTCTCTCATGAGTTTTCAGGAGCCCCCACATAAGCTAACATCCACGAATGCTCAAGTTCCTTACAGAAAATAATGTAGTACAGTTGGCCCTCCGTTTCTGAGGCTTTGCCTTCTCAGGTTCAACCAACCATGGATGGAAATTTGTGTCCACGGTTGGTTGAATCTGCTGATGCAAAACAAAATAGAGGACAGGTTGTATTTATTAAAAACATGCATGTAAGTGGACCTGTGAAGTTCAAACCTGTGCTATTCAAGGAAGGATTGACAACATATTTTAATGAAGTGGTGAGTCAGTTTAGTCTGCTGTAGTGAAATGTCACTAAGTGATTTGTTTATAAACAACTGTCTCACAGTTCTGGAGACTGGAAAGTCCAGGATCAAGACCCTGGTAGGATGTCTGATGAAGCCCCTTCCTGGTCCACAGATGGCCGTCTGTTTGCTGTGTCCTTCCATGGTGGAAGGGCTGGGGAGCTCTCTGGGGCGTCCTTTATGAGGACATGTTTGTGAGTCTATGTTTCATGAGTTCTGTTTGTGAGGACTGCCCTCATGACCTCATCACCTCCCAAAGGTCCCACTTCCAAATACCAGCACTTTGGGGATTAGGTTTCATCGTGAATTGGGGGGTGGGGGTGGGGACACAAACATTCTATTAACAAGTGGCTGAGCATCAATCAGAATTAGTGTGTTTTCCCTTTGTTTATTGATCTGGAGGTGACCACCCTGCTCCCAGCACATGGTAGATAAGGGCTTCACAACTGTCTGCTCTTGCTCCATCCCACACAGCCTCCTGGAGACCTCGTGGAATCTGTCTTTTTTCATCTAAGTATCACATAACCAGGAGCTGTACCGTATGTCTTGTAACTGCAGTTTAGCGTCAAGGGACTTACTCTTAAGATAGTTTTACTAAGAGCTCTGGCCCTTTTCATATCAGTATTTGTTTTTATGCTTAAGAGTTTAATCTGACTGCGTGTTTGTACTCCCATGGGAATCTTGGAGATTTTAGTGTCCTGCTTTTCAAATGTTTTTGATAATCTGTAAACTAAATTTGATTGTTCTTATTGGCCCACTGTCAATAAAGATATTGTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000943:ENSBTAT00000001247:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development