RnoINT0168000 @ rn6
Intron Retention
Gene
ENSRNOG00000003218 | Zfp286a
Description
zinc finger protein 286A [Source:RGD Symbol;Acc:1561950]
Coordinates
chr10:49185812-49191311:-
Coord C1 exon
chr10:49191219-49191311
Coord A exon
chr10:49188383-49191218
Coord C2 exon
chr10:49185812-49188382
Length
2836 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CATTTGCAATGTCTTTTCAGACG
3' ss Score
6.92
Exon sequences
Seq C1 exon
GGCTTCCTATTTCCAAACCTGATGACTACGATTCGGAAGATGGGAAAGAACTGTTGAAGCTCGAGAGAAAGTCTCCCAAGTGCAGCGACTCAG
Seq A exon
GTAGGTGAAGTAAATGGGGCTTCGGATGCGTCAGGAGTGAACAAGTGGTGCTTATCAGAGCTTAAGCGATCATTAGAAAAGCCTGTGCACTTTGATGGCCAAAATACTTGAAATTCTGGTGCTTTTACACATATGTCAAAATAAAATAACCATCACCAAAATTAAATGTTTTCTTTCACTCTCCGCTCCTTTCCTTTTTCTTTCTTCTTTTTTTTTTTTTTGCAACAGTAAAATACATAAAAGCATTATGTTTCTATGAATTTTTACAAGTTGGACACATTCACGTAACTACTGCCTAAATCAAGAAAGCACTCGTCTCCTGAGAAGCACTGGGTGTTCAAGTGTTCAATCACCTCTCCCCAAGGGTGACCTTGGTTCAGCTGGTAATACCGATGGTTAGCTCTGATGTCTGCTGAGCCTTATTTAAATGGAATCACTGTGTGTTCTCAGAGTCCGGCTTCCTTCCTGAACTTTCCCGTCAAGCTGCAGCCATGTTACGGCACGTTGCTAAGATGAGCTCACTCTCCATGCCTCCTGCCTTTTCAGTATCCCAGTTTCCCCATTCTCCAGCAGACAGGCATTTGGAGAGTGTGCACTATTGATTATATGGACACTGCTTCTATATACATTCTTCCACATGCCTTTTGATGGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCGCGCACAAAATGTAGACATTACCAAAGAGATTTATGAAATCTTTCCAAATATCCTTCTGCTGAGAGAAGTTGCAACTTGTAGTTTTTCCACTTGTTTATCAACAATTAATACTAACTGTGTTTATTTTAGCCATCCCTACGGATATATTATGTCTTTTACTTTTTAAGAAATTAAAATTTTAGGGATTCAGACAAAGGCCTCATTCTCCCATTCTCTAGAAGTAACCTCTTTGTCTCGAAGTTGGTGTGAGTCACTCTTTTATTTGCATGTACAGGTATATGCATGCACACGCATATATACATTAACATGTATATTTTATTGTTACAGTTTTTTCTGTGATCATCTTTAAGCTCTACCATTTCACTTTGTTATCAATCTATATTAATATGTAATGAATTGTACATTTTTTTCCTTTCAAACAAGGCAGAGTGTGGAGGAAGAGTATGAGTAAGCTGGACGGTTTGTTCTTACCTTCTGGCCATTAGCAGAGCTCATGACTGTCTTTTATTACTTGGGTTCCTCTTGAGGACTGACCTTAAAGTAGATGACTGGAAGATGGGCCTCAAAGTGCCCCCTACCTGTTTATTGAGCACCAGTTGACTCAGTCACTCATGTCCGTCTTGTAAAGAAGCACCACTTCTTATTCATTTGTGTTCTCCGAGTGCTAGGTCTGAACCGTGTGAGCATTCGTGATTATTGCCGACTCAGGGTTTCCTGATCTGTTGGAGCTGATTTAGACCCCAGTGCTTGAGAGTGGTGAAGTTACAAAACGAGGAGGAATAGAGTCTTCCAGATTGTAGTATATTTAATAGCCCCAAAGTTAGTATATTAAACTTTCAAACTTCAAAGTCAGAGTTACTGATATTTTTCACTCCTAGGGTTGGAACCCAAAGCCTTGTACAGGCGCGGCAAGCACTCTGCCCTTGAGCTCATCCCTCGCTCTTACCGATTTTCTAAGATTTCATTTCAGGGGCCGGAGAGATGGCTCAGAAGTTAAGGATACAAAATGTTCTTGTTGAAGACCTGAGTTTCTCAACACCCACGTCAGGCAGCTTACAACTGCCTACGACTCCAGGGGATCGAAGGCCTCTGGCCACTGTAGGCATCTGACTCACACATACATACCTGCACATAGACACAGATACACACATACATGCACACAGAGACACACAATTAGAATAATATTTTAAAAACATTTTGCTTTACATGTATGAGTGTGGGCCTGGAGAGAGTATTGGATCCCCTAGAACTGAAATTGCAGAGTGTTCTGAACCTTCCTGTGGATCCTGGGGATTGAACCTGGGTCCTCTACCATAGCAGCAAGTGCCCTTAACCACTGAGCCATCTCTGCAGCCCAGCTCTTACTATTTTACGTTTACCTGTTGTGAATTGTTTTGTCTTACCAGTATCAGAAAGATAGATAATCTGAATTTTATTAGGAAAGAATTTTATCAGAAAGATAATCTGAATTTTATTAGGAAAGACTCCAGTTTCATCATGCGGTTATTTATTTTTGTAAATGGCGTGCAGTGTGCCTTTTCCGTGCTCAGAGTCTATAACCCAACATCACTTACTGAGCGATCTTTTGCCAGTGGTTTGTGATGCTACCTTTAGGTGAGCCCAGTTCCCTTATAGATATTTGAATTTCTTCCTAGGCGTATTTGTCCATATTTCAGCACCATACTATTTTAATTACTATACTATTATAGTATTATACTATTATACTACATCTTAGTAAATTCTGCATACTTAGCAATACATATATGTATGTCATTTCCTTGGTATTTACTATAGCAGCAGAAGACATTCTATACAATGTGATTTTCCCATCCAGCTCTAATGTACTCACTGCCTGCTCCTTTGCTGACACTTTTGTTTCACCCCCTTCCCTCCTATGTTCGATTTCTGATCGCCTTTCCCCCCTCCGATTCTTCTGGCTAGAGCCTTTTCATCTTCATACTTACTTCCCTCGATTTCTTCCCGTTTTTGACAACCCATCCAATAAGAGTGTCAGATCTGCTAACCCCACAAAGGTTTACTTTCATCTCCGCTGTTACCTGCTATAGGACTGTGTTACTGTTAAGCACAGAAAACAAAGAGCATTTGCATTTGCAATGTCTTTTCAG
Seq C2 exon
ACGTGGAAACCAGACCCGAGAGCAAGGAGTCAACCTCAGTGCTAGACTTTCCCAAAGAAGAATCAGACAAACGGACACAAAAAACTGCTTTCGACCCCCATGTGGAAACTGCTCTTGAGTGCGAGCATTGGTTGGAGCCGCAGCAAGGGAATCGGGAGAAGCACCCAAGACAAGTGTCCACTCACCCGAACTCCCTCCCTGAAGAAGGAGATAGTGAATGTGATGTATATTGGAGAAATTTCAGTCAGAAACCTTGCCTTATGACTGATGACAGAGATCTGGAAGGATCCTGTGACTTCCACACGCTTGAGGAAAGACTGAAGCAGAAATCAAAGTTCATGAAAAAGCAGAGACCTTATAAAGACAAAAAGCCTCATAAATGTGATGACTGTGGTGAACTCTTCACTTACCATTCAGTACTGATCCGACACCAGAGAGTCCACACTGGAGAGAAACCCTATTCCTGCAGTGAGTGCGGGAAGTCCTTTAGCCACAGAGCCAATTTAACTAAACACCAGAGAACCCACACCAGAGTTCTCTTCGAGTGTGGTGAGTGCAAGAAAACCTTCATAGAAAGTTCAGCCCTCGCGGTACACCAGAGAATTCACATCGGGGAGAGACCTTATGAATGCGGCGAGTGCGGGAAAGGCTTTAACCGAAGTACACACCTTGCCCAACATCAGCTGATTCACACTGGTGTGAAGCCTTACGAGTGTAACGAGTGCGACAAAGCCTTCATTCATTCATCAGCTCTCATTAAGCATCAAAGAACTCATACTGGAGAGAAGCCCTATAAATGTCAAGAGTGTGGGAAAGCCTTCAGCCACTGCTCGTCTCTTACGAAGCACCAGAGAGTTCACACGGGAGAGAAGCCATATGAGTGTAGCGAGTGTGGGAAGACTTTTAGTCAGAGCACTCACCTTGTTCAGCACCAGAGAATTCACACTGGGGAGAAGCCCTACGAGTGCCACGAATGTGGGAAAACATTCAGCCGGAGCTCAAATTTTGCGAAGCATCAAAGAATTCACGTTGGAAAGAAACCCTATAAGTGTGGAGAATGCGGGAAAGCCTTCATTCATTCATCAGCTCTTATTCAACACCAGAGAACTCACACTGGAGAGAAGCCTTTTAGGTGTAATGAGTGTGGGAAAAGCTTCAAGTGCAGCTCATCCCTCATCCGACATCAAAGAACCCACACTGAAGAGCAGTCCTGAAGAGGTGCCGAGTGTTACGGGAAAGTTGGCTACGTCGCTGGGTTTAATATTTGAATGTTGAAATAGAAGGACCACAATGTGACCCTGGGGAGTGTCTGTGTGTATGATTTCCCTTGTCCGGTATATAACTTTAGAACAGCAGATGAAGAATCCCTTATACTCATTGGCTTGATAATAGTGAAAAGCCCTGGCTATAATTCTCAAAATGTTTCTTCTCGGTTTTCCAAATGCCCAATTTTAAATTCAAGAAATGCTTGGGAGACGGTAATACTGTGAACATCACGAAATCTAGTTTCCCTGTGCTTAGTCACAGCAGGGTATGCTGAAGCCTTCCCTTTAGTAAGGAAATCTTTTCTTTTGTAGATTAGGCTTGAGACACACATTCTTATCCTCAGGAAGATACACAGTTGTTACTCTCAATGCAAAGACAGACAAACCTACCACATCATTTCCTTCAAACTAAATGAAGGTGGAGAGATGAGAACAGCTTAGGATTCCATCCCCCACCAAGAGCGTCTAATTTGATGGATATAGATTCTAGGTTGGGTGTACATGAACTGTATTGGTCACTGATTCACATAAATGGCATTGTTATCCTTTTGTTTGGAAAATTCTCCGGTTCCTTGGGATCTACCCTACAGTACCTAGCAGATCAGAGTCTCCCCTTTCCTTTTGTGTGCCAAAGTCCTCTTTTCTCATCTTTGTCACTCATGGAGCCCTTGGCTTTTGGTAAGCAGGTCATCAAGGAGAGTTCCTTCTGATACATTATTAAGCTTCTGGTGCACTATCCTCTGTGACTTTTAGAAAGTCCTCTGGGTGTGTTGCAGTTTGACCATGTGAAAAGTTGATGGGGGTCAATGTATTATTTGGTTTAGGGTCCCAGGCAAGAGAATGCTGAGGTGACTGTGTGGTACCCCGGCTTCCTCTCCAGCATAGAAAGAAGCTCTCAGGGCAGCCCTGACGTGACCTGCCCAAGGATAAACATCTTTTTCTCCGACCTATCTGGCCTTCATGCTTACATTATTTTATTACTCTTATCATCCATACATTAGTTGGTCTTTACCCCTGGCCTCTTAAGTAAACATGCCATGAAATCATAATGACCTATTACTGTAATTTACATATGTGACCAAAAGCCATTGAGAAGATGGGAAACACAAAAACAAAGTAACTATGAGTAAAACAACACACAGTGCCAGGTTTTTAATTATTCTATTCTGTATTGTAGGTTATATATATAAGAATAAAATTATAGGAAAAGTAATCACAGGTTTTTAGCTTTTTGCCTTCCTATACCATTCTAATTTATGTTCCTACCCTCTGTCTGTTGCTGTGAAGAGACACTCTGACCATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003218:ENSRNOT00000004294:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=NA C2=0.210
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]