MmuEX0053196 @ mm9
Exon Skipping
Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62591889-62598495:-
Coord C1 exon
chr11:62598381-62598495
Coord A exon
chr11:62597174-62597263
Coord C2 exon
chr11:62591889-62594401
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTCTTAATAAACAGGGC
3' ss Score
9.14
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAAGCCATGACATTCAAGGATGTGGCCATGGACTTTACGCCAGAGGAGTGGGGGAAGCTGGATCCTGCACACAGGGCCGTGATGCTGGAGAACTACAGGAACCTGGTCTCGCTCT
Seq A exon
GGCTTCCCATTTCCAAACCCGATAACTATAATTCGGAAGATGGAAAAGAACTGTCGAAGCTTGAGAAGTCTCCCAAGTGCAGTGACTCAG
Seq C2 exon
ACATGGAAACCAGACCTGAGAGCAAGGAGTCAACTTCAGTGCTAGACTTTTCCAAAGAAGAGTCAAACAGACTGACAGAAAATACTGCTTCTGACTCCGACATTGAAACTGCTCTTGAATGTGAGCGTTGGCTAGAACATCGTCAAAGAAATCGGGAGAGGTACCCAAGACAAATGTCTGCTCACAGGAACTCCCTCCCTGCGCAAGAAGATGGTGAACGTGATGTATATTGGAAAAGCTTCAGTCAGAAACCTCTCCTTACAACTGATGACAGAGACCCCAAAGGATCCTGGGACGTTCACACGCTTGGGAAAAGACTGAAGCAGAAATCAAAGTTAATGACAAAGCAGAGACCTTATAAAGAGAAAAAACCTCATAAGTGTGATGAGTGTGGCGAACTCTTCACTTACCGTTCGGTACTTATCCGACACCAGAGAGTTCACACTGGAGAGAAACCTTATACCTGCAGTGAGTGCGGGAAGTCCTTCAGCCACAGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342-'5-9,'5-7,6-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.120 A=0.581 C2=0.287
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=94.9)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGATGCTGGAGAACTAC
R:
ACGATGTTCTAGCCAACGCTC
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types