MmuEX0053195 @ mm9
Exon Skipping
Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62597174-62601546:-
Coord C1 exon
chr11:62601461-62601546
Coord A exon
chr11:62598381-62598495
Coord C2 exon
chr11:62597174-62597263
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAAGTATATTTGTGTCTTAGGAA
3' ss Score
6.2
5' ss Seq
TCTGTAAGA
5' ss Score
4.08
Exon sequences
Seq C1 exon
CTCTGTCTTCCCCGGATTCTCTCCTTTCCCACGAGAAGAGTGCAGAAGGAGACGTGGCTGCTCTGAGACTCACTGTCAGATCCCAG
Seq A exon
GAAGCCATGACATTCAAGGATGTGGCCATGGACTTTACGCCAGAGGAGTGGGGGAAGCTGGATCCTGCACACAGGGCCGTGATGCTGGAGAACTACAGGAACCTGGTCTCGCTCT
Seq C2 exon
GGCTTCCCATTTCCAAACCCGATAACTATAATTCGGAAGATGGAAAAGAACTGTCGAAGCTTGAGAAGTCTCCCAAGTGCAGTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342-'3-7,'3-5,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=0.120 C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=94.9)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCCCCGGATTCTCTCC
R:
TGAGTCACTGCACTTGGGAGA
Band lengths:
172-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: