HsaEX0073361 @ hg19
Exon Skipping
Gene
ENSG00000187607 | ZNF286
Description
zinc finger protein 286A [Source:HGNC Symbol;Acc:13501]
Coordinates
chr17:15604466-15611561:+
Coord C1 exon
chr17:15604466-15604554
Coord A exon
chr17:15609701-15609815
Coord C2 exon
chr17:15611469-15611561
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAAAATATTTTATGTTTTAGGAA
3' ss Score
9.46
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
CTCTGTCTTCCCAGGATTCTCCCCATTTCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCTCTGCGCCTCACGGCCAGATCCCAG
Seq A exon
GAAACAGTGACATTCAAGGATGTGGCCATGGACTTTACACCAGAGGAGTGGGGGAAGCTGGATCCTGCACAAAGGGATGTGATGCTGGAGAACTATAGGAACCTAGTCTCACTTT
Seq C2 exon
GGCTTCCAGTTTCCAAACCTGAGAGCTACAACTTGGAGAATGGAAAAGAACCATTGAAGCTTGAGAGAAAAGCCCCCAAAAGCAGCTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187607-'2-6,'2-5,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.123 C2=0.506
Domain overlap (PFAM):
C1:
PF0311810=RNA_pol_A_CTD=PU(75.0=80.0)
A:
PF108153=ComZ=FE(67.9=100),PF0135222=KRAB=WD(100=94.9)
C2:
PF108153=ComZ=PD(28.6=50.0),PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCCCAGGATTCTCCCC
R:
TGAATAGCTGCTTTTGGGGGC
Band lengths:
178-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)