RnoEX6047682 @ rn6
Exon Skipping
Gene
ENSRNOG00000003218 | Zfp286a
Description
zinc finger protein 286A [Source:RGD Symbol;Acc:1561950]
Coordinates
chr10:49191219-49195222:-
Coord C1 exon
chr10:49195137-49195222
Coord A exon
chr10:49192415-49192529
Coord C2 exon
chr10:49191219-49191311
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAAGTATATTTGTGTCTTAGGAA
3' ss Score
6.2
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
CACTCTCTTCCCAGGATTCTCTCCTTTCCCAAGAGAAGAGTGCAGAAGGAGACGTGGCTGCTCTGAGACTCACAGCCAGACCCCAG
Seq A exon
GAAGCCGTGACATTCAAGGACGTGGCCATGGACTTCACACCTGAGGAATGGGGGAAACTGGATCCTGTACACAGGGACGTGATGCTGGAGAACTACAGGAACCTGGTCTCACTTT
Seq C2 exon
GGCTTCCTATTTCCAAACCTGATGACTACGATTCGGAAGATGGGAAAGAACTGTTGAAGCTCGAGAGAAAGTCTCCCAAGTGCAGCGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003218-'1-7,'1-5,4-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=0.265 C2=0.719
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=94.9)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSRNOT00000084418fB16909
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCTTCCCAGGATTCTCTCC
R:
CTGAGTCGCTGCACTTGGG
Band lengths:
178-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]