MmuEX0053195 @ mm10
Exon Skipping
Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62783672-62788044:-
Coord C1 exon
chr11:62787959-62788044
Coord A exon
chr11:62784879-62784993
Coord C2 exon
chr11:62783672-62783761
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAAGTATATTTGTGTCTTAGGAA
3' ss Score
6.2
5' ss Seq
TCTGTAAGA
5' ss Score
4.08
Exon sequences
Seq C1 exon
CTCTGTCTTCCCCGGATTCTCTCCTTTCCCACGAGAAGAGTGCAGAAGGAGACGTGGCTGCTCTGAGACTCACTGTCAGATCCCAG
Seq A exon
GAAGCCATGACATTCAAGGATGTGGCCATGGACTTTACGCCAGAGGAGTGGGGGAAGCTGGATCCTGCACACAGGGCCGTGATGCTGGAGAACTACAGGAACCTGGTCTCGCTCT
Seq C2 exon
GGCTTCCCATTTCCAAACCCGATAACTATAATTCGGAAGATGGAAAAGAACTGTCGAAGCTTGAGAAGTCTCCCAAGTGCAGTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.491 A=0.058 C2=0.516
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=94.9)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCCCCGGATTCTCTCC
R:
TGAGTCACTGCACTTGGGAGA
Band lengths:
172-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types