BtaEX0041220 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000943 | ZNF286A
Description
Bos taurus zinc finger protein 286A (ZNF286A), mRNA. [Source:RefSeq mRNA;Acc:NM_001110443]
Coordinates
chr19:33674605-33679504:+
Coord C1 exon
chr19:33674605-33674693
Coord A exon
chr19:33678267-33678381
Coord C2 exon
chr19:33679412-33679504
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAGTATGTTTTGTGTCTTAGGCA
3' ss Score
7.21
5' ss Seq
TCTGTAAGG
5' ss Score
4.7
Exon sequences
Seq C1 exon
CGCTGCCTCCCCAGGATTCTCCCTTTTCTCAAGAAAACTGCACAGAAGAGGGAGAAGTGGCAGCTTTGCGCCTCACAGCCAGATCGCAG
Seq A exon
GCATCAGTGACCTTCAAGGATGTGGCCATGGACTTTACCCCAGAGGAGTGGGGGAGGCTGGATCCCACCCAGAGGGACGTGATGCTGGAGAACTACAGGAACCTGGTCTCACTCT
Seq C2 exon
GGCTTCCGGTTTCCAAACCTGAGAACCACAGTTTGGAGAATGGAAAAGAACCACTGCTGCTTGAGAGAAAAGCCCCCAAAAGCAGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000943_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=0.333 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=94.9)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCCTCCCCAGGATTC
R:
GCAGCTGCTTTTGGGGGC
Band lengths:
178-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development