HsaEX0073361 @ hg38
Exon Skipping
Gene
ENSG00000187607 | ZNF286A
Description
zinc finger protein 286A [Source:HGNC Symbol;Acc:HGNC:13501]
Coordinates
chr17:15701152-15708247:+
Coord C1 exon
chr17:15701152-15701240
Coord A exon
chr17:15706387-15706501
Coord C2 exon
chr17:15708155-15708247
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAAAATATTTTATGTTTTAGGAA
3' ss Score
9.46
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
CTCTGTCTTCCCAGGATTCTCCCCATTTCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCTCTGCGCCTCACGGCCAGATCCCAG
Seq A exon
GAAACAGTGACATTCAAGGATGTGGCCATGGACTTTACACCAGAGGAGTGGGGGAAGCTGGATCCTGCACAAAGGGATGTGATGCTGGAGAACTATAGGAACCTAGTCTCACTTT
Seq C2 exon
GGCTTCCAGTTTCCAAACCTGAGAGCTACAACTTGGAGAATGGAAAAGAACCATTGAAGCTTGAGAGAAAAGCCCCCAAAAGCAGCTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187607-'7-11,'7-9,10-11=AN
Average complexity
A_C3
Mappability confidence:
80%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.197 C2=0.565
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=94.9)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCCCAGGATTCTCCCC
R:
TGAATAGCTGCTTTTGGGGGC
Band lengths:
178-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development