MmuINT0178930 @ mm9
Intron Retention
Gene
ENSMUSG00000047342 | Zfp286
Description
zinc finger protein 286 [Source:MGI Symbol;Acc:MGI:2384758]
Coordinates
chr11:62597174-62598495:-
Coord C1 exon
chr11:62598381-62598495
Coord A exon
chr11:62597264-62598380
Coord C2 exon
chr11:62597174-62597263
Length
1117 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGA
5' ss Score
4.08
3' ss Seq
CCTTTCTTCTTAATAAACAGGGC
3' ss Score
9.14
Exon sequences
Seq C1 exon
GAAGCCATGACATTCAAGGATGTGGCCATGGACTTTACGCCAGAGGAGTGGGGGAAGCTGGATCCTGCACACAGGGCCGTGATGCTGGAGAACTACAGGAACCTGGTCTCGCTCT
Seq A exon
GTAAGAACAACTTCTTCCCATAGCTGGGAAATCCACTCACGGGGCTGTCGTTACCTCATTGAGAATGAAATGCAGCAACAAGCCACCACTTTTCATTCCGTCGTGTTAAACTATTCCTTTTTGGCATAGAGGAAGAAAATGTTTTATTTCGCTGGAGGCTGAGCATTGACTCTGAGCCTTACATGTACTAAGCACACATGCAGCCACTGAGCTGTAGCCCCACCCCATTCTGTCCTAGATCCTTGGTGAAGTGTTTAGGTATCTGTGTATCAGATTCAAATAACTACCTATTTACACTAGCTTCAGGGAGAGGAACTTAGGAAAGCAAAGGTGCCATTGGAATTTTGTGTGTTTGTTTATAGTCGATGGACTTGTCTGTGCCCTGTCTTAACTATTCACTTAGCATCCTCCTATGTGGCCAAGGTGACCATCTGCAGCTCTGGGCATAGGTTACTCTTCCAGTTAGAGAGCTGAACAAAAAAGAGGAGACACTTTCATTTTGAAAATTCAACTAATAGGCATATATCCACCTGGGAAACAGAATAGGGCAGAAAGAGGGAGGTGCTTATGGCACATTTTGGATCCTTTGTGCATCACTCTGTGCGTGTAAGCGTACGAGCATGCATGTGTGTGTGCACTTTTATTTGAGGGTGGAACAGACTATGGTGGCCTCTGTCAAACCCTCATTTAATAAATCCCGAAGGAAATTCTAATAATTGGAAAAGGAAGAAAGGGAAAACATCAGAAGACAAAAACAGTGCTTGCAGTCACAGCTTGGGGATAGCACTGACGACCTCTATCATTCATATTCTTTCCCGAGTTTATACCGTTCCCCTTGGGCGATAAGGAAACTGAAAGACTTGTCTTCCTTTACAACAGACAAATTTGTCTTTACAAACTCTATTGCGCCTTGCACCAGTCTTAGACTCTTGCAGACATTTTAAGTTCCATTGAGAGGTCCTTCTTCCTTCACCCCAGATGGCCTCGCAACATCCTGTCTCCTCTGTAGCTGCAGGGCATGGGCCTAAATTCCAGTAGAGATCTCTGTGCCCACCAGAAAGACTGGTTTTATTCATTTTACTCTCTTCCTTTCCTTTCCTTTCTTCTTAATAAACAG
Seq C2 exon
GGCTTCCCATTTCCAAACCCGATAACTATAATTCGGAAGATGGAAAAGAACTGTCGAAGCTTGAGAAGTCTCCCAAGTGCAGTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047342-Zfp286:NM_138949:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.581
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=94.9)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTCAAGGATGTGGCCA
R:
CTGAGTCACTGCACTTGGGAG
Band lengths:
198-1315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: