RnoINT0167999 @ rn6
Intron Retention
Gene
ENSRNOG00000003218 | Zfp286a
Description
zinc finger protein 286A [Source:RGD Symbol;Acc:1561950]
Coordinates
chr10:49191219-49192693:-
Coord C1 exon
chr10:49192415-49192693
Coord A exon
chr10:49191312-49192414
Coord C2 exon
chr10:49191219-49191311
Length
1103 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
3' ss Seq
TTTCCTTCTTAATAATCAAGGGC
3' ss Score
4.81
Exon sequences
Seq C1 exon
AGAGATATGGATTTAAGGTGGAGTTTCCTGCCTCAAATCCCTCACAGGGTGCCCAGCTGCTTGGATTTGCAGTTAATTCCTGATGTAGTCAAGTTGACAACCAAGAACAGCCACCACAGGTGTCAACTAAAGGATGATGGAAATAAAGTATATTTGTGTCTTAGGAAGCCGTGACATTCAAGGACGTGGCCATGGACTTCACACCTGAGGAATGGGGGAAACTGGATCCTGTACACAGGGACGTGATGCTGGAGAACTACAGGAACCTGGTCTCACTTT
Seq A exon
GTAAGAACAGCTTCTTCCCACGGCTCTGAAATCCACTCATGGGGCTGTCATTAACGTCATTGAGTGTGAATTGCAGTAATAAGCCATCACTTGTCATTCAGTAGTGTTAAAGTATTTCTTTTTAGCATAGAGGAAGGAGATGTTTCACTTCGCTGGATGCTGAGGACTGGCTCTGAGCCTTGCGTGTACCAAGCATACACGCTGAGCTGCATCCCCCTCCCATTCTGTTCTAGATTCTTGGCAAAATGTTTAGATTTCTGTGAATCAAGGTTCAGATAACCACCTAATGTACACCAGCTTCAGGGGAGGGACTTGGGGAAGCAAAGGTGTCATTGGAATTTGGGGTATTCATTGTTCATAGTCAATTGGCTTCTCTGTGCCCTGTCTTAATTATTAACCTAGCGTCCTCCTAGGTGGCCGAGGTGGCCCTCAGCGCTCCGGGCATAGCTTATTCCTGCAGGTAGAGAGCTGAACAAATGAAGGAGACACTTTCATTTTGAAAATTCAACAAATAGGCATATACCCATCAGAGACACAGGTCAGAAAGAGGGAGTGCTTGTGGCCCGTTTCGTATCCTGAGTGTACATCACTCTGTGCGTGCATGCGTGCGAGTGTACGTGCACTTTATTTGAGGGTGGAAGAGACTATGGTGGCTTCTGTCAAACCCTCATGTAATAAATCCTTCAAGAGATTCTAGTAATTGGAAAAGAAAGGGGGAAAAATTAGAAGACAAAAAGCGGCACTCGCAGTCACAGATTGGGGAAGCCACTGAAGACCTCTATAATTCATACTCTTTCCTGAAGCGAAGATTGATCTGCAGTGCTGTTCTATAATCGTCCCCTTGGACAGTAAGGAGACTGAAAGGCTTGTCTTCCTTTACAACACACAAATTCGTCCTTACAAACTCCATTGAGCCTTGCACCAGTCTTAGACTCTTGCAGATATTTTGAGTCCCAATGAGAGGTCCTTCCTCTCTCACCCCAGATGGCCTTCCAACATCCTGTCTTCTCTGTAATGGAAGGGCATGGGTCTGAATTCCAGGAGAGATCTGTGTGTCTCGTTCATTTTCCTCTCTTCCTTCCCTTTCCTTCTTAATAATCAAG
Seq C2 exon
GGCTTCCTATTTCCAAACCTGATGACTACGATTCGGAAGATGGGAAAGAACTGTTGAAGCTCGAGAGAAAGTCTCCCAAGTGCAGCGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003218:ENSRNOT00000004294:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=NA C2=0.719
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAGTTTCCTGCCTCAA
R:
GCTGCACTTGGGAGACTTTCT
Band lengths:
350-1453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]