HsaINT0186774 @ hg38
Intron Retention
Gene
ENSG00000187607 | ZNF286A
Description
zinc finger protein 286A [Source:HGNC Symbol;Acc:HGNC:13501]
Coordinates
chr17:15706387-15708247:+
Coord C1 exon
chr17:15706387-15706501
Coord A exon
chr17:15706502-15708154
Coord C2 exon
chr17:15708155-15708247
Length
1653 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
3' ss Seq
TTCTTTTTTTAAATGAATAGGGC
3' ss Score
6.17
Exon sequences
Seq C1 exon
GAAACAGTGACATTCAAGGATGTGGCCATGGACTTTACACCAGAGGAGTGGGGGAAGCTGGATCCTGCACAAAGGGATGTGATGCTGGAGAACTATAGGAACCTAGTCTCACTTT
Seq A exon
GTAAGAATGGATTGTGATTCTGGAATCTGCTTATAGGAGCATCATTACTTTAATGAAAGTGAAATAGCTTAACAAAGCCTTCACCTTTGCATTCAGGAGTCAAAAAGTGTTAATTCTTTTTGGCCTGTGTAGAAAATCTGTTTTTGCTCTAGATTCTTGATGAAATGTCTGTGCTTGTTTTGTATCAGTATTCTTTGGGTTTAAGTGACAGAAACTTAACTCACACTCTTAAAGGGGAAAAAAATTTTGATTTTTCAGAGATCCAAATATATTATCAAGAATTTCCTTTATTCATTGATTTATTTTTAATCAATTAGCTTGGTTTTGCTCTGTATTAGCTTTATTCCTAGGATTTCCCCATGTGGCAAAGATGGCCAGTGGCAGTCCCAGGGTTACGTTATTCTTCCAGTTAGATAGCAAAGCTAAAAAAGAAAATGCTTCTTTCCTGGGAGTTTCAGCAAATAAGGTCACAGGCCCATCAGTGAAACAATCTCTAGAGCCAGCGAGATTGAGTACTCTGTGGCCAGTTTTAGATCCTGGGCTTACTAGCATGCACGCATACACACATGCATGCATATGATTGTATGAGGGGTGGAGGGGACTGTTAGCCCCTCCCAAACCTTATGTAAAAAAATCCCCTAAGAAAGTGACTTCTGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAACACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGACCCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTTTTTGTAAGACTCTGTCTAAAAAAAAAAAAAAAATTAAAAAAGAAAGTGACTTCTAATAACTGAAGAAGGAAAGGAAAAACATTAGAAGATAAAACTTCAGTTACCACCGTTACAGTTATGTGGTGCTGCCATTGAGGTCCCGCTTTTTCCTCCTTTCCTGAGGTAAGGACTAATTTGCAACATCTCTCTGAAGTTTCCTCACACAATAAGGAAATAAAGAGAAATTCCTTTCTTTTCTGACAGTTGAAAATATTTGTATTTTCCAAATCCAATTGAACTCCTTACCAGGCCCAGACTCTTGCTGCAGATATTTAAGCTTCATTTAGAGGTCCACCCTCCCTTACTTCAGCTCTTCCTGTAATACTTTGTAGATCAAGAGGTTGAGACCATATTCCGGTTTAGATCTTTATACCCATTACAAATAACTAAGTCCAGCAGGACGGTGGCCATGAAAGTTGGTCGTGGTGGCTCACACCTGTAATCCCAGCACTTAGGGAGGCAGAGGTGGGAGGATAGCTTGAGCCCCGGAGTTCGAGACCTGCCTGGGCAATATAGTGAGATCCCATTAACTTTAAAAATAAAAAATAAAAAGTAAATTTTTATAAATTAAAAAAAAAGAAAGAAAGTTGGAATTCACTAAGGAATATGTAACAATTCAACTGGCTTGAAGAAAACTTCCACAAATAACTTACTCCCATTACTTTCTTCTTTCTGTCTTTTTCTTTTTTTAAATGAATAG
Seq C2 exon
GGCTTCCAGTTTCCAAACCTGAGAGCTACAACTTGGAGAATGGAAAAGAACCATTGAAGCTTGAGAGAAAAGCCCCCAAAAGCAGCTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187607:ENST00000464847:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.565
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=94.9)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGTGACATTCAAGGATGTGG
R:
GAATAGCTGCTTTTGGGGGCT
Band lengths:
206-1859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains