HsaINT0186774 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:15609701-15611561:+
Coord C1 exon
chr17:15609701-15609815
Coord A exon
chr17:15609816-15611468
Coord C2 exon
chr17:15611469-15611561
Length
1653 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
3' ss Seq
TTCTTTTTTTAAATGAATAGGGC
3' ss Score
6.17
Exon sequences
Seq C1 exon
GAAACAGTGACATTCAAGGATGTGGCCATGGACTTTACACCAGAGGAGTGGGGGAAGCTGGATCCTGCACAAAGGGATGTGATGCTGGAGAACTATAGGAACCTAGTCTCACTTT
Seq A exon
GTAAGAATGGATTGTGATTCTGGAATCTGCTTATAGGAGCATCATTACTTTAATGAAAGTGAAATAGCTTAACAAAGCCTTCACCTTTGCATTCAGGAGTCAAAAAGTGTTAATTCTTTTTGGCCTGTGTAGAAAATCTGTTTTTGCTCTAGATTCTTGATGAAATGTCTGTGCTTGTTTTGTATCAGTATTCTTTGGGTTTAAGTGACAGAAACTTAACTCACACTCTTAAAGGGGAAAAAAATTTTGATTTTTCAGAGATCCAAATATATTATCAAGAATTTCCTTTATTCATTGATTTATTTTTAATCAATTAGCTTGGTTTTGCTCTGTATTAGCTTTATTCCTAGGATTTCCCCATGTGGCAAAGATGGCCAGTGGCAGTCCCAGGGTTACGTTATTCTTCCAGTTAGATAGCAAAGCTAAAAAAGAAAATGCTTCTTTCCTGGGAGTTTCAGCAAATAAGGTCACAGGCCCATCAGTGAAACAATCTCTAGAGCCAGCGAGATTGAGTACTCTGTGGCCAGTTTTAGATCCTGGGCTTACTAGCATGCACGCATACACACATGCATGCATATGATTGTATGAGGGGTGGAGGGGACTGTTAGCCCCTCCCAAACCTTATGTAAAAAAATCCCCTAAGAAAGTGACTTCTGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAACACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGACCCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTTTTTGTAAGACTCTGTCTAAAAAAAAAAAAAAAATTAAAAAAGAAAGTGACTTCTAATAACTGAAGAAGGAAAGGAAAAACATTAGAAGATAAAACTTCAGTTACCACCGTTACAGTTATGTGGTGCTGCCATTGAGGTCCCGCTTTTTCCTCCTTTCCTGAGGTAAGGACTAATTTGCAACATCTCTCTGAAGTTTCCTCACACAATAAGGAAATAAAGAGAAATTCCTTTCTTTTCTGACAGTTGAAAATATTTGTATTTTCCAAATCCAATTGAACTCCTTACCAGGCCCAGACTCTTGCTGCAGATATTTAAGCTTCATTTAGAGGTCCACCCTCCCTTACTTCAGCTCTTCCTGTAATACTTTGTAGATCAAGAGGTTGAGACCATATTCCGGTTTAGATCTTTATACCCATTACAAATAACTAAGTCCAGCAGGACGGTGGCCATGAAAGTTGGTCGTGGTGGCTCACACCTGTAATCCCAGCACTTAGGGAGGCAGAGGTGGGAGGATAGCTTGAGCCCCGGAGTTCGAGACCTGCCTGGGCAATATAGTGAGATCCCATTAACTTTAAAAATAAAAAATAAAAAGTAAATTTTTATAAATTAAAAAAAAAGAAAGAAAGTTGGAATTCACTAAGGAATATGTAACAATTCAACTGGCTTGAAGAAAACTTCCACAAATAACTTACTCCCATTACTTTCTTCTTTCTGTCTTTTTCTTTTTTTAAATGAATAG
Seq C2 exon
GGCTTCCAGTTTCCAAACCTGAGAGCTACAACTTGGAGAATGGAAAAGAACCATTGAAGCTTGAGAGAAAAGCCCCCAAAAGCAGCTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
-ZNF286A:NM_001130842:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGTGACATTCAAGGATGTGG
R:
GAATAGCTGCTTTTGGGGGCT
Band lengths:
206-1859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)