BtaINT0165216 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000943 | ZNF286A
Description
Bos taurus zinc finger protein 286A (ZNF286A), mRNA. [Source:RefSeq mRNA;Acc:NM_001110443]
Coordinates
chr19:33678267-33679504:+
Coord C1 exon
chr19:33678267-33678381
Coord A exon
chr19:33678382-33679411
Coord C2 exon
chr19:33679412-33679504
Length
1030 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGG
5' ss Score
4.7
3' ss Seq
TTTTTTTTTCTAATGAGCAGGGC
3' ss Score
5.49
Exon sequences
Seq C1 exon
GCATCAGTGACCTTCAAGGATGTGGCCATGGACTTTACCCCAGAGGAGTGGGGGAGGCTGGATCCCACCCAGAGGGACGTGATGCTGGAGAACTACAGGAACCTGGTCTCACTCT
Seq A exon
GTAAGGACAGACTCTCATTGTGACTCCTGACCTGCTTATGGGGACCTCACTGTTTTATTGGCAGTGAAGTAGCTTAACAAAGCCAGAAATATGTAAAGTGTTGGTCCCTTTGGGCCCAGAGAGAATCTGTTTATGCTCTAGGGTCTTGGTGAAATGTCTGGGCTTGTTTTCTTTTATTAGGAGTCTTTGGATTCAGGTGACAGAAACTGAATTCAGACTAGCTTGAAAGGGAATCAGATACGGTGTCAGGATAATTCCTGCTTATATTTTAATGACGTGCCATAGGTTTGCCTGAATCTCCCTGTGGGCAGAGATGGCCTTTGGCCTCTCTAGTGTTACGTTGTTCTTCCAGTGATAGAGCTGAGGAAAGAAAGAGGGCTTCTGTCCTGGGAGTTTCATCAGATAGGCTCATGTATCCATCATGAGACAGTACTCAAGCCAGGGAAATAGAGAACACTCTGGCCAGTTTGGATCCTGTGTCCACCTCTGTGTGGTGTGTTTGTGTGCAAGTGTGTGCATGCACACACATACATGTACATGTATTATTCATATGAGGAGTGGAAGGAAGTATCTTAGTTCCTCCCAAATCTCATGTAATAAATTCAATAAGAAAGTGGGTTCTAGTAACTGAAGCAAAAAGAAAGGAAAACATCAGAAACAACTAGTCATAGACCCCCAGGCTCATGGTGCTGCTGCAGGGGTCCCACTTCACCCAGCTCTTTGCCTAAGCTGAGGACTGATGAGCAGTGTCTCCCTGGGGACTCCTGTAATAAACAAGTGAGAAATTCTTTTTTTTTTTTTCCATTTTTTACAGGCTAAATGTTTGTCTTTTCAAATGCATGTGACTCCTTACTGTGCCCAGACTCCTGCTGCACATGTTTTAAGCTTCGTTTATAGGCTTCCACCTCCCTCATTCCAGAACTTCCTATGGTGTCTTGTCTTTGTGGATCCAAGGGTTGGGACTGTGCTCTGGGACACAGCTTTATACCCATCACCAAGAGCTAAGTTCCTTTTTTTTTCTAATGAGCAG
Seq C2 exon
GGCTTCCGGTTTCCAAACCTGAGAACCACAGTTTGGAGAATGGAAAAGAACCACTGCTGCTTGAGAGAAAAGCCCCCAAAAGCAGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000943:ENSBTAT00000001247:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.875
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=94.9)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTCAAGGATGTGGC
R:
CAGCTGCTTTTGGGGGCTTTT
Band lengths:
198-1228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development