BtaEX6087360 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000000943 | ZNF286A

Description

Bos taurus zinc finger protein 286A (ZNF286A), mRNA. [Source:RefSeq mRNA;Acc:NM_001110443]

Coordinates

chr19:33678267-33688126:+

Coord C1 exon

chr19:33678267-33678381

Coord A exon

chr19:33679412-33679504

Coord C2 exon

chr19:33683774-33688126

Length

93 bp

Sequences

Splice sites

3' ss Seq

TTTTTTTTTCTAATGAGCAGGGC

3' ss Score

5.49

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GCATCAGTGACCTTCAAGGATGTGGCCATGGACTTTACCCCAGAGGAGTGGGGGAGGCTGGATCCCACCCAGAGGGACGTGATGCTGGAGAACTACAGGAACCTGGTCTCACTCT

Seq A exon

GGCTTCCGGTTTCCAAACCTGAGAACCACAGTTTGGAGAATGGAAAAGAACCACTGCTGCTTGAGAGAAAAGCCCCCAAAAGCAGCTGCTCAG

Seq C2 exon

ACTCGGAGACTAGTCCCAGAAGCAAGCATTCAACTTCAGTGCAAGATTTTTCCAAAGAAGAATCATGCCAGGTTGCAGTCATAGACAGGCTGACAAGGGACAGTGTCTGTGACTCCAGCACAGAAACAACTCTTGACTGTGAAGACTGGTTGGAGAATCAGCAGGGAAGTCAGGAGAGACACTGGAGAGGAATGTTCACCCACATGAATTCACTCCCAGAAGAGAGAGCCCCTGAGCACGACGTTTACTGGAAAACCCTAGGCCAGAAGTCAGTCCTTCTCACTCAAGACAGAGTTCCCAAAGGACCCTATGCTTTCCACACCCTCGAAAAAAGACTGAAACAGAAATCTACCTTAATGAAAAAGCAGAGGACCTATAAAGAAAAGAAACCTCATAAATGCAATGACTGTGGTGAACTCTTTACTTACCACTCAGTGCTTATTCGACACCAGAGGGTCCATACAGGGGAGAAGCCCTACAGCTGTGCAGACTGTGGGAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000000943-'3-11,'3-4,5-11=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.333 A=0.875 C2=0.151

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=94.9)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)

Main Inclusion Isoform:

ENSBTAP00000001247