RnoEX6047683 @ rn6
Exon Skipping
Gene
ENSRNOG00000003218 | Zfp286a
Description
zinc finger protein 286A [Source:RGD Symbol;Acc:1561950]
Coordinates
chr10:49185812-49192693:-
Coord C1 exon
chr10:49192415-49192693
Coord A exon
chr10:49191219-49191311
Coord C2 exon
chr10:49185812-49188382
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTCTTAATAATCAAGGGC
3' ss Score
4.81
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGAGATATGGATTTAAGGTGGAGTTTCCTGCCTCAAATCCCTCACAGGGTGCCCAGCTGCTTGGATTTGCAGTTAATTCCTGATGTAGTCAAGTTGACAACCAAGAACAGCCACCACAGGTGTCAACTAAAGGATGATGGAAATAAAGTATATTTGTGTCTTAGGAAGCCGTGACATTCAAGGACGTGGCCATGGACTTCACACCTGAGGAATGGGGGAAACTGGATCCTGTACACAGGGACGTGATGCTGGAGAACTACAGGAACCTGGTCTCACTTT
Seq A exon
GGCTTCCTATTTCCAAACCTGATGACTACGATTCGGAAGATGGGAAAGAACTGTTGAAGCTCGAGAGAAAGTCTCCCAAGTGCAGCGACTCAG
Seq C2 exon
ACGTGGAAACCAGACCCGAGAGCAAGGAGTCAACCTCAGTGCTAGACTTTCCCAAAGAAGAATCAGACAAACGGACACAAAAAACTGCTTTCGACCCCCATGTGGAAACTGCTCTTGAGTGCGAGCATTGGTTGGAGCCGCAGCAAGGGAATCGGGAGAAGCACCCAAGACAAGTGTCCACTCACCCGAACTCCCTCCCTGAAGAAGGAGATAGTGAATGTGATGTATATTGGAGAAATTTCAGTCAGAAACCTTGCCTTATGACTGATGACAGAGATCTGGAAGGATCCTGTGACTTCCACACGCTTGAGGAAAGACTGAAGCAGAAATCAAAGTTCATGAAAAAGCAGAGACCTTATAAAGACAAAAAGCCTCATAAATGTGATGACTGTGGTGAACTCTTCACTTACCATTCAGTACTGATCCGACACCAGAGAGTCCACACTGGAGAGAAACCCTATTCCTGCAGTGAGTGCGGGAAGTCCTTTAGCCACAGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003218-'4-9,'4-7,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=0.719 C2=0.210
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACACAGGGACGTGATGCTG
R:
ACCAATGCTCGCACTCAAGAG
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]