HsaEX6021284 @ hg38
Exon Skipping
Gene
ENSG00000197566 | ZNF624
Description
zinc finger protein 624 [Source:HGNC Symbol;Acc:HGNC:29254]
Coordinates
chr17:16647329-16653667:-
Coord C1 exon
chr17:16653568-16653667
Coord A exon
chr17:16649658-16649746
Coord C2 exon
chr17:16647329-16647394
Length
89 bp
Sequences
Splice sites
3' ss Seq
GGCTTATTTCTCTTCCTTAGGTA
3' ss Score
10.56
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGCCCCTGTCCCTGAGCGGACCCGCCCACTCCTGAGAGGCGATTGGGGCTGGGCCTCCTTCCCGAGTGTGGGTTCAGTCTCCAGCTGGCCTCCCTCACAG
Seq A exon
GTATGTCTTTGCAAGACTCCACTCTTTCCAGAGAGGGGAAACCAGAGGGAGAGATTATGGCTGCTGTGTTTTTCTCAGTTGGACGCCTG
Seq C2 exon
AGCCCTGAAGTTACCCAGCCAGATGAAGATCTTCACCTTCAGGCAGAAGAAACACAATTGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197566-'2-3,'2-2,4-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.414 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTCCCTGAGCGGAC
R:
ACCAATTGTGTTTCTTCTGCCTG
Band lengths:
159-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains