HsaEX6036919 @ hg19
Exon Skipping
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:1485]
Coordinates
chr1:223815711-223842101:-
Coord C1 exon
chr1:223842032-223842101
Coord A exon
chr1:223816364-223816482
Coord C2 exon
chr1:223815711-223815844
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGTGACACTGTGCAGGTG
3' ss Score
7.7
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAGTTGTGTCCCAGCCCTCAGTTTATCGTTGGTGGAGCCACGCGCACAGACATTTGTCAGGGTGGTCTAG
Seq A exon
GTGACTGCTGGCTTCTGGCTGCCATTGCCTCCCTGACCCTGAATGAAGAGCTGCTTTACCGGGTGGTCCCCAGGGACCAGGACTTCCAGGAGAACTATGCGGGAATCTTTCACTTTCAG
Seq C2 exon
TTCTGGCAGTACGGAGAGTGGGTGGAGGTGGTCATTGACGACAGGCTGCCCACCAAGAATGGACAGCTGCTCTTCCTACACTCGGAACAAGGCAATGAATTCTGGAGTGCCCTGCTGGAGAAAGCCTATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697-'1-4,'1-2,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(62.2=95.8)
A:
PF0064816=Peptidase_C2=FE(13.0=100)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGTGTCCCAGCCCTCAG
R:
GGCATAGGCTTTCTCCAGCAG
Band lengths:
202-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)