BtaEX0022217 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003600 | MGC151839
Description
Bos taurus calpain 8 (CAPN8), mRNA. [Source:RefSeq mRNA;Acc:NM_001081619]
Coordinates
chr16:27711585-27739036:-
Coord C1 exon
chr16:27738967-27739036
Coord A exon
chr16:27712233-27712351
Coord C2 exon
chr16:27711585-27711718
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTCGACCCGGCGCAGGTG
3' ss Score
5.19
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GAATTGTGCCCCAGCCCTCAGTTTATCGTTGGTGGAGCCACGCGCACAGACATCTGTCAGGGTGCCCTGG
Seq A exon
GTGACTGCTGGCTGCTGGCGGCCATTGCCTCCCTCACCTTGAACCGAGAGCTGCTGTACCGCGTGGTTCCCAGGGACCAGAGCTTCCAGGAGAACTATGCAGGAATCTTTCGTTTTCAG
Seq C2 exon
TTCTGGCAGTATGGAGAGTGGGTGGAGGTGGTCGTGGACGACAGGCTCCCCACCAAGAATGGAAAGCTGCTCTTCCTGCATTCCGAAGAAGGCAGTGAATTCTGGAGCGCACTGCTGGAGAAGGCCTATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003600-'2-6,'2-5,6-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.7=100)
A:
PF0064816=Peptidase_C2=FE(13.0=100)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCAGCCCTCAGTTTATC
R:
CATAGGCCTTCTCCAGCAGTG
Band lengths:
194-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development