HsaEX6037802 @ hg19
Exon Skipping
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:23713]
Coordinates
chr1:247491985-247493383:-
Coord C1 exon
chr1:247493268-247493383
Coord A exon
chr1:247492491-247492917
Coord C2 exon
chr1:247491985-247492168
Length
427 bp
Sequences
Splice sites
3' ss Seq
TGATTTCTGTTTGGAAATAGGGT
3' ss Score
6.78
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTCCATTTGTAAAGGTCTTAATAACAAGAACAGTGACTTCGGCTCCGGAGCTTCAAGATAGTGGCCTGCTTGGCCTGCCCATCTCGGATCTCTCCAGGAGGACCCAGCCACCCAAG
Seq A exon
GGTCGTCTTCTGCTGCTGACCCCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCCCGAGTCTTGGCTCCGAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGCCCACCTGGAGAGAACCCTAGCCCCCAGGGGGAGCTTCCCAGCCCCGAGTCCTCTCGGCGTCTCTTCCGCCGTTTCCGCTACCAGGAGGCGGCGGGCCCCCGGGAGGCCCTGCAGCGCCTCTGGGACCTGTGCGGGGGCTGGCTGCGGCCTGAGAGGCACACCAAGGAGCAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGCCATCCTGCCCCGGGAGATCCAGAGCTGGGTGCGGGCGCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCCGCGGTGGAGGCACTGGAACGGGAGCCCGGGAGACCCTGGCAGTGG
Seq C2 exon
CTCAAGCACTGTGAAGACCCTGTGGTGATTGATGATGGGGACAGCCCTCTGGACCAGGAGCAGGAGCAGCTGCCGGTAGAGCCCCACAGCGACCTTGCAAAGAACCAGGATGCCCAGCCCATAACCCTGGCACAGTGCCTGGGGCTCCCAAGCAGACCACCAAGCCAGCTCAGCGGGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714-'3-7,'3-4,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.321 C2=0.516
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=72.3)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTCTTAATAACAAGAACAGTGAC
R:
CTGAGCTGGCTTGGTGGTCT
Band lengths:
278-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)