RnoEX6047460 @ rn6
Exon Skipping
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45848669-45849951:-
Coord C1 exon
chr10:45849846-45849951
Coord A exon
chr10:45849120-45849547
Coord C2 exon
chr10:45848669-45848846
Length
428 bp
Sequences
Splice sites
3' ss Seq
CGATTTCTGTTTGGAAATAGGGT
3' ss Score
6.29
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
TTCAATTTGTGAAGACCTCAAGAACAGAGACAGTGACTTTGTCTCCAAAGCGTCCAGATTATCGCCGCCTGGGGCTATATCCTCCGGGAGGACCTGCCCATCAAAG
Seq A exon
GGTCGTCTTCTGCCGCTGACCCTCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCACGAGTCTTGGCTCCAAAGGAAAGCGAGGAGCCCAGGAAAATGCGGAGTCCTCCTGGAGAGAACCCCAGCCCTCAGGGTGAGCCTCCCAGCCCAGAGTCCTCTCGACGCCTCTTCCGCCGGTTCCGCTACCAGGAGGCCGCAGGCCCTCGGGAGGCCCTGCAGCGCCTCTGGGAGCTGTGCCGGGGCTGGCTGAGGCTCGAAAGGCACACGAAGGAGCAGATCCTGGAACTACTGGTGCTGGAGCAGTTCTTGGCTATCCTGCCGTGGGAGATCCAGAGCTGGGTGCGTGCCCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCTGCAGTAGAGGCTCTGGAACGGGAGCCAGGGAGACCCTGGCAGTGG
Seq C2 exon
CTCAAGCACTGTGAAGACCCCGTGGTAATTGATGACGGTGATGGGCCTGCGCCTCAGGATCTAGAACAAGAACGAATGTCTGCAGAGTCCCAGAGCAACCCTGATGCCCTGCCGGGGGCTCTAGCACAGGACCCTGGGCTCCTAAGCAGATCGCCAGGCCAGCCTAGTGAAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129-'8-6,'8-4,12-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.400 C2=0.867
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=72.3)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGAAGACCTCAAGAACAGAGAC
R:
CTGGGTCTTCACTAGGCTGGC
Band lengths:
278-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]