MmuEX0053868 @ mm9
Exon Skipping
Gene
ENSMUSG00000020472 | Zkscan17
Description
zinc finger with KRAB and SCAN domains 17 [Source:MGI Symbol;Acc:MGI:2679270]
Coordinates
chr11:59316422-59317756:-
Coord C1 exon
chr11:59317650-59317756
Coord A exon
chr11:59316886-59317312
Coord C2 exon
chr11:59316422-59316602
Length
427 bp
Sequences
Splice sites
3' ss Seq
TGATTTCTGTTTGGAAATAGGGT
3' ss Score
6.78
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
TTCAATTTGTGAAGACCTCAAGAACAGAGACGGTGACTTCGACTCCAAAGCTTCAAGATTGTGGCCTGCTGGGGCTATTATCCTCCAGGAGGACCTGTCCATCAAAG
Seq A exon
GGTCGTCTTCTGCCGCTGACCCCCATCAAATCCCATCATGCCCACAGCCCTGTGCCCACGAGTCTTGGCTCCAAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGTCCTCCTGGAGAGAACCCCAGCCCTCAGGGTGAGCCTCCCAGCCCAGAGTCCTCTCGACGCCTCTTCCGCCGCTTCCGCTACCAGGAGGCCGCAGGCCCTCGGGAGGCCCTGCAGCGCCTCTGGGAGCTGTGCCGGGGCTGGCTGAGGCTCGAAAGGCACACGAAGGAGCAGATCCTGGAGCTACTGGTGCTGGAGCAGTTCTTGGCTATCCTGCCGTGGGAGATCCAGAGCTGGGTGCGAGCCCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCTGCAGTAGAGGCTCTGGAACGGGAGCCAGGGAGACCCTGGCAGTGG
Seq C2 exon
CTCAAGCACTGTGAAGACCCGGTGGTGATTGACGATGGCGACGGGCCTGCTGCGCCTCAGGACCTGGAACAAGAACGAATGTCAGCAGAGTCCCAGAGCTACCCTGATGCCCCGCCTGGGGCTCTAGTACAGGGCACTGGGCTTCTAAGCAGATCACCAGGCCAGCCTAGCGAAGACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020472-'7-10,'7-8,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.381 C2=0.873
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=72.3)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATTTGTGAAGACCTCAAGAACA
R:
CTAAGTCTTCGCTAGGCTGGC
Band lengths:
287-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: