HsaEX6038662 @ hg19
Exon Skipping
Gene
ENSG00000186814 | ZSCAN30
Description
zinc finger and SCAN domain containing 30 [Source:HGNC Symbol;Acc:33517]
Coordinates
chr18:32843477-32870172:-
Coord C1 exon
chr18:32870048-32870172
Coord A exon
chr18:32843909-32844419
Coord C2 exon
chr18:32843477-32843621
Length
511 bp
Sequences
Splice sites
3' ss Seq
TGAGCATTGTCCACCCTCAGGAG
3' ss Score
5.87
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGTCCCTAGCAGTGCCTTAGCCAGGGACCTGCTTGGCCAGCGACAGATCCTTTGCTGCTCTGTCTGCCGGTTCTTGAGGTGAATGTCGGAATCCATTATCTTTCGGGAAAGCTCTCTGGGGCAGG
Seq A exon
GAGCGTCCTGGGGAGTTGGAATTCAGAAGGAATCTCTCAGACGCAAATCTCCATCTCCTCCCTGCCTCACCTGGGCAGCCTTTTCAGACTGTCTCTGCCCAGAATGTCAGGAGAGGCCACAGTCTTGGCCTACCATGCTCCAGAAGAACAGGAAGGACTTCTAGTTGTCAAGGTTGAAGAAGAAAATTATGTTTTGGACCAGGACTTTGGCCTTCAGGAAAACCCCTGGAGCCAAGAGGTATTCCGGCAGAAGTTCAGGCAGTTTAGTTACTCTGACTCCACTGGCCCTCGGGAGGCTCTGAGCCGGCTGCGAGAGCTTTGCTGTCAGTGGTTGAGGCCGGAGGTGCACTCCAAGGAGCAGATCCTGGAGCTGCTGATGTTGGAGCAGTTCCTGGCCATCCTTCCTGAGGAGCTGCAAGCTTGGCTGCGAGAGCATCGGCCAGAGAATGGAGAGGAAGCTGTGACTATGCTGGAGGAGCTGGAAAAAGAACTGGAGGAGCCAAGGCAACAG
Seq C2 exon
GACACAACTCATGGCCAAGAAATGTTCTGGCAGGAAATGACATCCACAGGAGCACTGAAGTCTCTGTCTCTGAATAGCCCGGTGCAGCCCTTAGAGAACCAGTGCAAGACTGAGACTCAGGAGTCCCAGGCTTTCCAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186814-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.191 C2=0.724
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=69.1),PF0161413=IclR=PU(67.2=30.1)
C2:
PF0202312=SCAN=PD(0.1=0.0),PF0161413=IclR=PD(29.5=36.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCTAGCAGTGCCTTAGC
R:
CTGGAAAGCCTGGGACTCCT
Band lengths:
263-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)