MmuEX6000578 @ mm10
Exon Skipping
Gene
ENSMUSG00000024274 | Zscan30
Description
zinc finger and SCAN domain containing 30 [Source:MGI Symbol;Acc:MGI:2685600]
Coordinates
chr18:23964575-23987603:-
Coord C1 exon
chr18:23987206-23987603
Coord A exon
chr18:23971382-23971845
Coord C2 exon
chr18:23964575-23965833
Length
464 bp
Sequences
Splice sites
3' ss Seq
ATGAACACTGTCCACCTCAGGGG
3' ss Score
5.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATTTTAATTTAATCCTTTTCTGACACTCAGGAAAACTCTCTCTCTCAAAACAATGATCTTCGTAAAGTTGAGAAAGAATCATCAACAGGGGGTCCTTTATGGCCAGATCAATTTGAGGGAAAATATATACATGTATTTTAAGTCATTTGAACACACCTTGAAAACGTAATAGTCTCTTTCATGCACTGACTTGAATTAACTCTCAAGATTTGGTTCACTATAATCTTTGCAATTTTATCATGTGTTCAGTCACCGAAACACCCCTAAAAGGGCACATGCAGCCATAGAAAAAGTAGTCCTTTGGGTTTCCTAGAGGGGCAAGCTCGTTCCCACTTCCGGCACGCGAGCACCAAGGCTTTCTGGCTTCCCTCGGCTGTGCGGGTAATCTGCGGAGCGAG
Seq A exon
GGGTTCTTTGGATCCACCTCCTCTCTGCCTCAGCCTTTCAGATTATTCTGACCAGGATGTTCAGAGAAACAACAGCCTTGGCCTGTCATGCTTCAAAAGGACAAAATAGGCTCAACTTTGTGAAAGTTGAAGAAGAAAATGGTGTTTGGAAGCAGGACTTAAGTCTTCAGGGAAACCTCCAGAGCCAGGAGGTTTTCCGTCAGCAGTTTAGACAGTTTGGTTACTCTGATTTCACTGGGCCCCGGGAGGCTCTGAACCGACTGCAGAAGCTTTGCCAGCAGTGGCTGAGGCCAGAGGAGCACTCTAAGGAGCAGATCCTAGAATTGCTGGTGCTAGAGCAGTTCATGACCATCTTGCCTATGGAGCTGAAGGCCTGGGTGCAAGAACACAGGCCCAGAAGTGGAGAGGAGGCTGTGACTCTGCTGGAGGAGCTAGAGAGAGAATTTGATGAACCCAAGCACCAG
Seq C2 exon
ATAGCAAGATGGTGACTGGGAAAATATTGACAGCAAAGCAAGAAATTATTGAATGTGTTGCATCAGTGGCCATGGCATCTCCAGGAAGACTTCCTAGGGAAACTTCTCCAGTACAGATAGTTGAAGAAACTATGGAATGTCTGGACAACAATGAGAAGCAAAGAGGAAGTGATGATACAAGCAACAAAACAAGTCAGCTTTCTTCTCAGGAAGACTATTTCAGTTTGGCAACCTTTAACAAGAAACCCCCTATAGAACAGAACATCTTTGAGTGTAATGAAGGTGATAGGATCCCTAGTCAAAACTTACATGGTACTACACGGCCCACAACTCACACAGGGAAACTGCTCTATGCGTGTGTAGATTGTGGGAAAACTTTTTGCAATAGATCAAAACTTATTAGACACCAGAGAAGTCACACTGGAGAGAGACCTTATGCATGTAAAGAATGTGGAAAGGCCTTTGGTTTCAGAGCAGACCTTGTAAGACATCAGAGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024274_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.007 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=69.1)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCTGTGCGGGTAATC
R:
TGGGCCGTGTAGTACCATGTA
Band lengths:
357-821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types