MmuEX6000578 @ mm9
Exon Skipping
Gene
ENSMUSG00000024274 | Zscan30
Description
zinc finger and SCAN domain containing 30 [Source:MGI Symbol;Acc:MGI:2685600]
Coordinates
chr18:24129476-24140056:-
Coord C1 exon
chr18:24140026-24140056
Coord A exon
chr18:24129883-24130346
Coord C2 exon
chr18:24129476-24129653
Length
464 bp
Sequences
Splice sites
3' ss Seq
ATGAACACTGTCCACCTCAGGGG
3' ss Score
5.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTTCCACGTGCTCCCACAACTCCCAGACAAG
Seq A exon
GGGTTCTTTGGATCCACCTCCTCTCTGCCTCAGCCTTTCAGATTATTCTGACCAGGATGTTCAGAGAAACAACAGCCTTGGCCTGTCATGCTTCAAAAGGACAAAATAGGCTCAACTTTGTGAAAGTTGAAGAAGAAAATGGTGTTTGGAAGCAGGACTTAAGTCTTCAGGGAAACCTCCAGAGCCAGGAGGTTTTCCGTCAGCAGTTTAGACAGTTTGGTTACTCTGATTTCACTGGGCCCCGGGAGGCTCTGAACCGACTGCAGAAGCTTTGCCAGCAGTGGCTGAGGCCAGAGGAGCACTCTAAGGAGCAGATCCTAGAATTGCTGGTGCTAGAGCAGTTCATGACCATCTTGCCTATGGAGCTGAAGGCCTGGGTGCAAGAACACAGGCCCAGAAGTGGAGAGGAGGCTGTGACTCTGCTGGAGGAGCTAGAGAGAGAATTTGATGAACCCAAGCACCAG
Seq C2 exon
GGTTTTTCTCTTAGCTGCACTCAGTCACACTACTGGTACTTGTTACTCTAGGACACAGCTCATGGTCAAGAAATGATCTGCAAAGAAACGACACTCATGGGAACATCAGAGTCTCTAAGTAGTCCACTGCAGTCCTTGGAGAGCCATTGCAAGAGTGAACCCCAGGATCCCCAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024274-'0-2,'0-0,1-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=69.1)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCACGTGCTCCCACAAC
R:
AAATCTGGGGATCCTGGGGTT
Band lengths:
209-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: