MmuEX1028862 @ mm10
Exon Skipping
Gene
ENSMUSG00000024274 | Zscan30
Description
zinc finger and SCAN domain containing 30 [Source:MGI Symbol;Acc:MGI:2685600]
Coordinates
chr18:23971382-23987603:-
Coord C1 exon
chr18:23987206-23987603
Coord A exon
chr18:23981525-23981608
Coord C2 exon
chr18:23971382-23971845
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTACCCTTTGTGTTCCAGGTA
3' ss Score
11.88
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ATTTTAATTTAATCCTTTTCTGACACTCAGGAAAACTCTCTCTCTCAAAACAATGATCTTCGTAAAGTTGAGAAAGAATCATCAACAGGGGGTCCTTTATGGCCAGATCAATTTGAGGGAAAATATATACATGTATTTTAAGTCATTTGAACACACCTTGAAAACGTAATAGTCTCTTTCATGCACTGACTTGAATTAACTCTCAAGATTTGGTTCACTATAATCTTTGCAATTTTATCATGTGTTCAGTCACCGAAACACCCCTAAAAGGGCACATGCAGCCATAGAAAAAGTAGTCCTTTGGGTTTCCTAGAGGGGCAAGCTCGTTCCCACTTCCGGCACGCGAGCACCAAGGCTTTCTGGCTTCCCTCGGCTGTGCGGGTAATCTGCGGAGCGAG
Seq A exon
GTATCAGACTCAGGTCAGAAGGTTTGGTGGCAAATGTACTGTCCCATCCTGTCCTTCCACGTGCTCCCACAACTCCCAGACAAG
Seq C2 exon
GGGTTCTTTGGATCCACCTCCTCTCTGCCTCAGCCTTTCAGATTATTCTGACCAGGATGTTCAGAGAAACAACAGCCTTGGCCTGTCATGCTTCAAAAGGACAAAATAGGCTCAACTTTGTGAAAGTTGAAGAAGAAAATGGTGTTTGGAAGCAGGACTTAAGTCTTCAGGGAAACCTCCAGAGCCAGGAGGTTTTCCGTCAGCAGTTTAGACAGTTTGGTTACTCTGATTTCACTGGGCCCCGGGAGGCTCTGAACCGACTGCAGAAGCTTTGCCAGCAGTGGCTGAGGCCAGAGGAGCACTCTAAGGAGCAGATCCTAGAATTGCTGGTGCTAGAGCAGTTCATGACCATCTTGCCTATGGAGCTGAAGGCCTGGGTGCAAGAACACAGGCCCAGAAGTGGAGAGGAGGCTGTGACTCTGCTGGAGGAGCTAGAGAGAGAATTTGATGAACCCAAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024274_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=69.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGTTTCCTAGAGGGGCAA
R:
GGCCAAGGCTGTTGTTTCTCT
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types