HsaEX6041380 @ hg38
Exon Skipping
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr16:575839-578505:+
Coord C1 exon
chr16:575839-575970
Coord A exon
chr16:576134-576254
Coord C2 exon
chr16:578379-578505
Length
121 bp
Sequences
Splice sites
3' ss Seq
GGGCCGGACCTCCCTTCCAGGAA
3' ss Score
7.66
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGTGTTCAAGCTCTGGCCCCTGTCCTTCCTCGGGAGCAAACTCTCCACGTGCGAACAGCTCCGGCACCGGCTGGAGCACCTCACGCTAATCTTCAGTACACGGAAGGCGGAGAACCCTGCCCAGCTGATGAG
Seq A exon
GAAGGCCAACACGGTGGCCTCTGTGCTGCTGGACGTGGCCCTGGGCCTCATGCTGCTGTCCTGGCTCCACGGGAGAAGCCGCATCGGGCATCTGGCCGACGCCCTCGTTCCTGTGGCTGAC
Seq C2 exon
CACGTGGCCGAGGAGCTCCAGCATCTGCTGCAGTGGCTGATGGGTGCTCCCGCCGGGCTCAAGATGAACCGTGCACTGGACCAGGTGCTGGGCCGCTTCTTCCTCTACCACATCCACCTGTGGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541-'14-29,'14-22,16-29=AN
Average complexity
A_S
Mappability confidence:
87%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(0.1=0.0)
A:
PF0502410=Gpi1=PU(21.1=97.6)
C2:
PF0502410=Gpi1=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCAAGCTCTGGCCCC
R:
ACAGGTGGATGTGGTAGAGGA
Band lengths:
252-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains