BtaEX0027048 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:504944-506768:+
Coord C1 exon
chr25:504944-505075
Coord A exon
chr25:505156-505276
Coord C2 exon
chr25:506642-506768
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCCGCTGAACCTGCTTCCAGGAA
3' ss Score
8.3
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTGTTCCGGCCGTGGCCACTGTCCTTCATCTGGAGCAAGCTGTCTACCTGCGAGCAGCTCAGGCATCGGCTGGACCAGCTCACGCTCGTCGTCAGTGCCCACAGGGCCGAGGGCCCTGCCCAGCTGATGAG
Seq A exon
GAAGGCCAACACGCTGGTCTCTGTGCTGCTCGACATGGCCCTGGGCCTCCTGCTGCTGTCCTGGCTGCACAGGAAGGACCGCTTTGCTCATCTGGCCGAGGCGCTCGTCCCTGTGGCTGAC
Seq C2 exon
CGTGTGGCCGAGGAGCTCCAGCATCTGCTGCAGTGGTTGATGGGTGCGCCCGCCGGGCTCAAAATGAACCGGGCGCTGGACCAGGTGCTGGGCCGCTTCTTCCTGTATCACATCCACCTGTGGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0502410=Gpi1=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCCACTGTCCTTCATC
R:
ACAGGTGGATGTGATACAGGA
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development