DreEX6016762 @ danRer10
Exon Skipping
Gene
ENSDARG00000038097 | pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:ZFIN;Acc:ZDB-GENE-030131-9793]
Coordinates
chr3:26670674-26673765:-
Coord C1 exon
chr3:26673634-26673765
Coord A exon
chr3:26671767-26671887
Coord C2 exon
chr3:26670674-26670800
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCACTCCTCTGCAGAAA
3' ss Score
10.51
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATTTTAAATATACCTCCTGTGAAGTTCATTACAAGCAAGCTGTCCACGTGTGTTCAGTCGGGTTACAGGGCCGTTCATTTTAAGACCGTTTTCTCCCCTAAAAAAGCTGATACACACATGGATTTCATGAG
Seq A exon
AAAAGCAAACATCTTTGTGTCTTTCCTTGTGGACATAGCCTTTGGTTTGCTGCTCATCTCATGGCTGTATAGGGAGAATCGTATCAGCAAATTAGCCAATACTCTGGTACCTGTGGCTGAT
Seq C2 exon
CATGTGGCCAAAGAGCTCCAGCAGCTGTTAGAATGGCTGATGGGAGCTCCTGCTGGACTGAAGATGAACAAGGCTCTCGATCAAGTGCTGGGGAGGTTCTTTCTTTATCACATTCATCTGTGGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038097-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(0.1=0.0)
A:
PF0502410=Gpi1=PU(21.1=97.6)
C2:
PF0502410=Gpi1=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCTGTGAAGTTCATTACAAGC
R:
AATGTGATAAAGAAAGAACCTCCCCA
Band lengths:
234-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]