RnoEX6046738 @ rn6
Exon Skipping
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15294734-15297201:-
Coord C1 exon
chr10:15297070-15297201
Coord A exon
chr10:15296819-15296939
Coord C2 exon
chr10:15294734-15294860
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGTTTTCCTTCCAGGAA
3' ss Score
13.77
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCTATGGAAGCTGGGGCCTCTTGCCTTCATCAGAAGCAAGCTCTCCACTTGTGAGCAGCTCCAGCACCGGCTGAAGCACCTCTCATTCATCTTCAGCACCGAGAAAGCCCAGAGTCCCATGCAGCTGATGAG
Seq A exon
GAAGGCCAACATGCTGGTTTCTGTGCTCCTGGATGTGGCCCTTGGCTTGCTGCTGCTCTCTTGGCTCCACAGCAACAACCGGATTGGACAGCTGGCCAATGCCCTGGTCCCTGTGGCCGAT
Seq C2 exon
CGCGTGGCTGAGGAGCTCCAGCATCTGCTGCAGTGGCTGATGGGTGCTCCTGCTGGGCTCAAGATGAATCGGGCACTGGATCAGGTGCTAGGCCGCTTTTTCCTGTACCACATCCACCTGTGGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140-'14-8,'14-5,15-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(0.1=0.0)
A:
PF0502410=Gpi1=PU(21.1=97.6)
C2:
PF0502410=Gpi1=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGAAGCTGGGGCCTCTT
R:
TGTGGTACAGGAAAAAGCGGC
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]