HsaEX6043495 @ hg19
Exon Skipping
Gene
ENSG00000155319 | ANKRD26P1
Description
NA
Coordinates
chr16:46593860-46598211:-
Coord C1 exon
chr16:46598097-46598211
Coord A exon
chr16:46597763-46597936
Coord C2 exon
chr16:46593860-46593963
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTCTAACACTGACAGGCG
3' ss Score
4.13
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GACTGCTCTGCATTTGGCCTGTGCCAACGGCCATCCAGAAGTGGTAGCTCTTCTGGTGGACAGAGGATGTCAACTTGATGTCTTTGACAACAAAAACAGGACTGCTCTGCTAAAG
Seq A exon
GCGGTACAATGCCAGGAAGAGGAATGTGCGACTATTTTGCTAGAACACGGAGCCGACCCAGACCTTCCAGATGTCTATGGCAATACTACCTTACACTATGCCATCTACAATGAGGATATCCCAATGACAAAAAAACTGCTTTTACACCATGCCAATATTGAATCAGCAAACAAG
Seq C2 exon
GATGAACTCACACCATTTTTGCTAGCTGTACATGAACAAAAACAGCAAATGGAAGACTTTTTAAGAAAGCAAAAAGAAAATTTAACTGCAGTTAAGCTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155319-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.400
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCTCTGCATTTGGCCT
R:
CTTTCAAGCTTAACTGCAGTTAAATT
Band lengths:
219-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)