HsaEX6046101 @ hg19
Exon Skipping
Gene
ENSG00000204642 | HLA-F
Description
major histocompatibility complex, class I, F [Source:HGNC Symbol;Acc:4963]
Coordinates
chr6:29693788-29706305:+
Coord C1 exon
chr6:29693788-29693820
Coord A exon
chr6:29705899-29705965
Coord C2 exon
chr6:29706153-29706305
Length
67 bp
Sequences
Splice sites
3' ss Seq
GTGCTTGTTCTGCTTTACAGGAA
3' ss Score
10.34
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ATAGAAACAGAGGGAGCTACTCTCAGGCTGCAG
Seq A exon
GAAAGTTGACTCATACTGGTGTCCAGTGAAGAAACCCAGGCGCATAAGAGGGACAGTTGGATCTCAG
Seq C2 exon
GGAGGACTGTCTTCTTCTCACCTCCCCGGACGATGCTTCTTGACACAGGAAAGAGGATGTGCTGCTAGGGTCATCATGTCCTGGTTTATTGTGTTGTCAGTAGAATGAAATCAAAATACATACTTCATAAATAATAAAATAACCCATAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204642-'15-33,'15-32,24-33=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACAGAGGGAGCTACTCTC
R:
TGATTTCATTCTACTGACAACACAA
Band lengths:
144-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)