HsaEX6046421 @ hg19
Exon Skipping
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:11398]
Coordinates
chr6:31948228-31949223:+
Coord C1 exon
chr6:31948228-31948325
Coord A exon
chr6:31948431-31948578
Coord C2 exon
chr6:31948781-31949223
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCACTTCTCCTCTAGGGC
3' ss Score
11
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCATCTGGTGAATGCTGGAGTCCTCACCGTCCGAGATGCTGGGAGCTGGTGGCTAGCTGTGCCTGGAGCTGGGAGATTCATCAAGTACTTTGTTAAAG
Seq A exon
GGCGCCAGGCTGTCCTTAGCATGGTCCGGAAGGCAAAGTACCGGGAACTGCTCCTATCAGAGCTCCTGGGCCGGCGGGCGCCTGTCGTGGTGCGGCTTGGCCTCACCTACCATGTGCACGACCTCATTGGGGCCCAGCTAGTGGACTG
Seq C2 exon
CATCTCTACCACTTCAGGAACCCTCCTCCGCCTGCCAGAGACATGAAGATTCTGCTCATCATTGCTCAGCTCCTCAGAGTGGGCCGGGAGGGGACTAGAAGAGCTGCATGATGGTGGCTGAGACAGGGTCACCTTGGGAAGGCTTGGGAGCCAGGATGAGTGTCGGGCTCTCGTGTGTGCAAAAGGTCAGATGTGACTGCTGCTGTTTGCCTGGTTTCTGACCCAGTGGTGGGGTTTGAGCAATGCTTCTCTGCCCTTCCATGGAAAGTGGAACCAGAAATGGTGCCAAGGCTGTGGCTGTTCCCTTTCGTGTAAAATGGTGCTGTTATTACTCTGTCTTGAAATAGGAAGGTGGGATTTCTGGGGAGGCTGGTGAAGGAGGGCAGGGTTCTTTTCTCTACGTGTCATGTTAAAATTGCCAAATAAAGTACCTCTGCCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344-'16-23,'16-22,18-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=PD(12.9=37.5)
A:
PF104944=Stk19=FE(22.0=100)
C2:
PF104944=Stk19=PD(4.9=68.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAATGCTGGAGTCCTCA
R:
GACACTCATCCTGGCTCCCAA
Band lengths:
257-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)