RnoEX0002713 @ rn6
Exon Skipping
Gene
ENSRNOG00000000423 | AABR07044388.1
Description
NA
Coordinates
chr20:4317440-4318342:-
Coord C1 exon
chr20:4318245-4318342
Coord A exon
chr20:4317990-4318137
Coord C2 exon
chr20:4317440-4317805
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCTGGATCCTCTCCTCCAGGAC
3' ss Score
9.76
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCACCTGGTGAATGCTGGAGTCCTCACTGTCCGTGATGCTGGAAGCTGGTGGCTGGCTGTGCCCGGAGCTGGGAGATTCATTAAGTGCTTTGTTAAAG
Seq A exon
GACGCCAGGCTGTACTGAGCATGGTGCGGAAGGCCAAGTACCGGGAGCTTCCCCTGTCGGAGCTCCTGGGCTGCAGGGCCCCTTCAGCAGTGCGGCTAGGTCTTGCCTACCATGTGCATGACCTCATTGGGGCACAGCTGGTGGACTG
Seq C2 exon
TGTCCCCACCACTTCTGGAACCCTCCTTCGCCTGCCAGATACGTGAGGAGTCAGCTCTTGGATTCTTCAGCTCACTGAGCGAGGTTCCCGGACGTGCCGCCCCAGGGACTGAGCGAGGTTCCCGGACGTGCCACCCCAGGGTGGCTGTACAAGTCACCACAGAGGGCGCAAGGCTCTGCTGCTGCAAGCTGAGGCTCCCACCTGAGCTGGGCTGTGGGCACTGCAGCCCTTGGTTCCTTCCGTGGGTGTGGAGCCAGGAGCCGAGCCAAGGGGATAAGAAGATGGCTGGAGACACTGGAGAAGGAAGCAGAAAACTCTGCCCTTCACGTCAGACTGAAATTGCCAAATAAAATACTTGTGCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000423_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGTGAATGCTGGAGTC
R:
GTGGTGACTTGTACAGCCACC
Band lengths:
257-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]