DreEX6019247 @ danRer10
Exon Skipping
Gene
ENSDARG00000086628 | stk19
Description
serine/threonine kinase 19 [Source:ZFIN;Acc:ZDB-GENE-000616-11]
Coordinates
chr3:56534393-56537852:-
Coord C1 exon
chr3:56537755-56537852
Coord A exon
chr3:56534652-56534799
Coord C2 exon
chr3:56534393-56534562
Length
148 bp
Sequences
Splice sites
3' ss Seq
AATGCTGCTTTTTCTAACAGGGC
3' ss Score
10.06
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GCAGCTGGTGAAGTCTGGTCTCCTCACTGTGAGAGATGCAGGCAGCTGGTGGCTCTCAATCCCAAACTCTGGCAGATTCATTAAGTACTTCATTAAAG
Seq A exon
GGCGTAAAGCTGTACTTAACATGGTGAAGAAATCCAAATACAGTGAAATCTTAAGGACTGAGCTGGAGGAGCGTCGCACAACTGCACAGGTTAAGTTCCAGATGAAGTATCACGTTCATGATATCATTGGAGCAGACTTAGTAGAATG
Seq C2 exon
TATACAGACCACATCAGGGACAGTATTACGATACGTGGACGGAAACAACTAACACTTTTTTTATGATTTTCTTATTGTACAAAATGGATTGTAGATGTATTTATTGCTATATTTTTGTTTGTAAAACAGAAGCAACTGTGCACAATGTTGTAATAAAAGATTGCCAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086628-'4-8,'4-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(14.7=100)
A:
PF104944=Stk19=FE(21.8=100)
C2:
PF104944=Stk19=PD(4.9=61.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGAAGTCTGGTCTCCT
R:
TTTATTACAACATTGTGCACAGTTG
Band lengths:
252-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]