MmuEX0045406 @ mm10
Exon Skipping
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34823993-34824848:-
Coord C1 exon
chr17:34824751-34824848
Coord A exon
chr17:34824514-34824661
Coord C2 exon
chr17:34823993-34824324
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCTGGACCTTCTCCTCCAGGGC
3' ss Score
9.29
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCAGCTGGTGAACGCTGGGGTCCTCACTGTCCGAGATGCTGGAAGCTGGTGGCTGGCTGTGCCTGGAGCTGGGAGATTCATCAAGTGCTTTGTTAAAG
Seq A exon
GGCGCCAGGCTGTACTGAGCATGGTGCGGAAGGCCAAGTACCGGGAGCTTGCCTTGTCAGAGCTCCTGGGCCGCAGGGCCCCTTTGGCAGTGCGGCTAGGTCTTGCCTACCATGTGCACGACCTCATTGGAGCCCAGCTGGTGGACTG
Seq C2 exon
TGTCCCCACCACTTCTGGAACCCTCCTTCGCCTGCCAGATACATGAGGAGCCAATGCTTGGATTCTGCAACTCACTGAGTGAGGTTCCTGGAAGTGCCACCCCAGGGTGGCTGAGCAAGTCACCGCAGTGGGTGCCAGGCTCTGCTGCTGCAAGCTGGGCTTCTACCTGAGCTGGGCTGTGGGCATTGCAGCTCTTGCTTCTGTGCGTGTGGAGTCAGGAGCCGTGCCAAGGGGATGAGAAGGTGGGGTTGCTGGAGACACTGGAGCAGGGAGTAGAAAACTCTGCCCTTCACGTCAGGCTGAAATTGCCAAATAAAATACTTGTGCCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(14.8=100)
A:
PF104944=Stk19=FE(22.0=100)
C2:
PF104944=Stk19=PD(4.9=68.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGTCCGAGATGCTGGAA
R:
ACAGCCCAGCTCAGGTAGAAG
Band lengths:
255-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types