MmuINT1032338 @ mm10
Intron Retention
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34823993-34824661:-
Coord C1 exon
chr17:34824514-34824661
Coord A exon
chr17:34824325-34824513
Coord C2 exon
chr17:34823993-34824324
Length
189 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTTGTCTTTCTGTTACACAGTGT
3' ss Score
7.46
Exon sequences
Seq C1 exon
GGCGCCAGGCTGTACTGAGCATGGTGCGGAAGGCCAAGTACCGGGAGCTTGCCTTGTCAGAGCTCCTGGGCCGCAGGGCCCCTTTGGCAGTGCGGCTAGGTCTTGCCTACCATGTGCACGACCTCATTGGAGCCCAGCTGGTGGACTG
Seq A exon
GTGAGTCTAGTCCTGAGACTTGGGAAACGTGCAGGGACCCAGGGTTGGCGACCCTGTAAGTGTTGCTTCTGTCATCAGTGAAGCCGAGATTCTCTCATTCCCGGACTCGGGAGAAGACTGGACTAAATTCTGGATTTGCACACTTTGGGTCTAGGCAGCTGACTCCAGTCTTGTCTTTCTGTTACACAG
Seq C2 exon
TGTCCCCACCACTTCTGGAACCCTCCTTCGCCTGCCAGATACATGAGGAGCCAATGCTTGGATTCTGCAACTCACTGAGTGAGGTTCCTGGAAGTGCCACCCCAGGGTGGCTGAGCAAGTCACCGCAGTGGGTGCCAGGCTCTGCTGCTGCAAGCTGGGCTTCTACCTGAGCTGGGCTGTGGGCATTGCAGCTCTTGCTTCTGTGCGTGTGGAGTCAGGAGCCGTGCCAAGGGGATGAGAAGGTGGGGTTGCTGGAGACACTGGAGCAGGGAGTAGAAAACTCTGCCCTTCACGTCAGGCTGAAATTGCCAAATAAAATACTTGTGCCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207:ENSMUST00000077477:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(22.0=100)
A:
NA
C2:
PF104944=Stk19=PD(4.9=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGCACGACCTCATTGGA
R:
CTGACTCCACACGCACAGAAG
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types