HsaEX6056771 @ hg19
Exon Skipping
Gene
ENSG00000174844 | DNAH12
Description
dynein, axonemal, heavy chain 12 [Source:HGNC Symbol;Acc:2943]
Coordinates
chr3:57440502-57443947:-
Coord C1 exon
chr3:57443826-57443947
Coord A exon
chr3:57443448-57443730
Coord C2 exon
chr3:57440502-57440621
Length
283 bp
Sequences
Splice sites
3' ss Seq
ATTTGCATGTTTTTCCCTAGTTT
3' ss Score
8.67
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
GTTCTTGCTGCCACTTCTTTAACAGGTTTATTGGAAAAACTACAGAACTGCAATGAACTTTTGGAGAAAATTATGAAAGGTCTTAACGCATATCTTGAAAAGAAACGTCTTTTCTTCCCTCG
Seq A exon
TTTTTTCTTCTTATCTAATGATGAAATGTTAGAGATTTTATCAGAGACCAAAGATCCACTTAGAGTTCAGCCACATTTAAAAAAATGCTTTGAGGGCATTGCTAAATTAGAGTTCCTTCCCAATTTGGACATTAAAGCCATGTATAGCTCTGAGGGCGAGCGAGTGGAGCTGATTGCACTCATTTCCACGTCTGCAGCGCGGGGTGCTGTGGAAAAGTGGCTCATTCAAGTGGAAGACCTAATGCTCCGGAGTGTTCACGATGTGATCGCTGCAGCCAGGCTG
Seq C2 exon
GCTTATCCAGAATCTGCAAGAAGAGACTGGGTTCGAGAGTGGCCTGGCCAAGTTGTACTTTGTATTTCTCAAATGTTCTGGACATCTGAGACACAGGAAGTGATAAGTGGCGGGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.5=100)
A:
PF083938=DHC_N2=FE(22.4=100)
C2:
PF083938=DHC_N2=PD(0.5=5.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTGCCACTTCTTTAACAGG
R:
CGTCCCGCCACTTATCACTTC
Band lengths:
236-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)