DreEX6079815 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19619047-19620608:-
Coord C1 exon
chr23:19620487-19620608
Coord A exon
chr23:19619240-19619522
Coord C2 exon
chr23:19619047-19619166
Length
283 bp
Sequences
Splice sites
3' ss Seq
ATCATGATTTTTTCACACAGATT
3' ss Score
7.48
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATTTTAGCTGCAACCTCTCTTCCTGGCTTGTTTGAGAAACTGCAAGAGTCCTACAATCTCCTTGAGAACATTATGAAGGGCCTGAATGCATACCTTGAAAAGAAAAGATTGTTCTTTCCAAG
Seq A exon
ATTCTTTTTCCTATCAAATGACGAGATGCTGGAGATTCTCTCAGAAACCAAAGATCCCACGCGAGTGCAGCCACACTTGAAGAAATGCTTTGAGGGCATTGCCAAACTGGACTTCCTGCCCAATCTGGACATCCAAGCCATGTACAGCAGCGAGGGTGAGCGTGTGGAGTTCATCCAGCTCATCTCAACTTCTGAAGCACGAGGAGCTGTGGAGAAGTGGCTGGTGCAGGTGGAGGACATAATGCTGAGAAGCATCAGAGATGTGATCAATCGCTCCAGGCTG
Seq C2 exon
GCTTATCCGGAGACTAAAAGGAGTCAGTGGGTACGTGAGTGGCCTGGGCAGGTGGTCCTCTGTGCTTCTCAGATGTACTGGACGGTGGAGGTGCATGAGGCCATCAGAAGTAGTGCTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.0=100)
A:
PF083938=DHC_N2=FE(21.3=100)
C2:
PF083938=DHC_N2=PD(0.5=5.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGCTGCAACCTCTCTTCCTG
R:
AGCACTACTTCTGATGGCCTCA
Band lengths:
236-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]