MmuEX6040117 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27579258-27583251:+
Coord C1 exon
chr14:27579258-27579379
Coord A exon
chr14:27579476-27579758
Coord C2 exon
chr14:27583132-27583251
Length
283 bp
Sequences
Splice sites
3' ss Seq
TTCCTATGTTTCTTTTCTAGCTT
3' ss Score
10.62
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTGCTTGCTGCTACTTCTTTAACAGGCTTGTTGGAAAAACTACAGAATTGCAATGACCTTTTGGAGAAAATCATGAAAGGACTGAATGCGTACCTTGAGAAGAAGCGTCTTTTCTTCCCCCG
Seq A exon
CTTTTTCTTTTTATCTAATGATGAAATGCTAGAGATTTTGTCAGAGACCAAAGATCCACTCAGAGTTCAGCCACACTTAAAAAAATGCTTTGAGGGCATCGCTAAGTTGGAGTTCCTGGCTAATCTGGATATTAAAGCCATGTATAGCTCTGAGGGTGAGCGAGTGGAGCTGATTGCTCTGATCTCCACGACTGCAGCGAGGGGCGCTGTAGAGAAATGGCTCATTCAAGTAGAAGACCTAATGCTCAGAAGTATTCGTGATGTGATTGCTGCCTCCAGACTG
Seq C2 exon
GCTTATCCAGAGTCTGCAAGAAAAGACTGGGTCAGAGAGTGGCCTGGCCAGGTTGTTCTTTGTGTGTCTCAAATGTTCTGGACTTCTGAGACACAGGAAATCATAAGTGGTGGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.0=100)
A:
PF083938=DHC_N2=FE(21.3=100)
C2:
PF083938=DHC_N2=PD(0.5=5.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTACTTCTTTAACAGGCT
R:
TCTGTTCCACCACTTATGATTTCCT
Band lengths:
236-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: