RnoEX6054503 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2430711-2434570:+
Coord C1 exon
chr16:2430711-2430832
Coord A exon
chr16:2430933-2431215
Coord C2 exon
chr16:2434451-2434570
Length
283 bp
Sequences
Splice sites
3' ss Seq
ATTCCCATATTCTTTTCTAGCTT
3' ss Score
8.37
5' ss Seq
CTGGTACGC
5' ss Score
8.06
Exon sequences
Seq C1 exon
GTTCTTGCTGCTACTTCTTTAACAGGCTTGTTGGAAAAACTACAGAATTGCAATGACCTTCTGGATAAAATCATGAAAGGACTGAATGCATACCTTGAGAAGAAGCGACTTTTCTTCCCTCG
Seq A exon
CTTTTTCTTTTTATCTAATGATGAAATGCTAGAGATTTTGTCAGAGACCAAAGATCCACTCAGAGTTCAGCCACACTTAAAAAAATGCTTTGAGGGCATCGCTAAGTTGGAGTTCCTGACTAATCTGGATATTAAAGCCATGTACAGCTCTGAGGGTGAACGAGTGGAGCTGATTTCAGTGATTTCCACGTCTGCAGCGAGGGGTGCCGTAGAGAAATGGCTCATTCAAGTAGAAGACCTAATGCTCAGAAGTATCCATGATGTGATTGCTGCATCTAGACTG
Seq C2 exon
GCTTACCCAGAATCTGCAAGGAAAGACTGGGTCAGAGAGTGGCCTGGCCAGGTTGTTCTTTGTGTGTCTCAGATGTTCTGGACTTCTGAGACACAGGAAGTCATAAGTGGTGGAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'25-30,'25-29,26-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(9.0=100)
A:
PF083938=DHC_N2=FE(21.3=100)
C2:
PF083938=DHC_N2=PD(0.5=5.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTACTTCTTTAACAGGCT
R:
TCGTTTCCACCACTTATGACTTCC
Band lengths:
236-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]