HsaEX6057495 @ hg19
Exon Skipping
Gene
ENSG00000144821 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:31073]
Coordinates
chr3:108188889-108195362:-
Coord C1 exon
chr3:108195244-108195362
Coord A exon
chr3:108189545-108189694
Coord C2 exon
chr3:108188889-108189059
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTTTTCAATGTGATTTCTAGGTA
3' ss Score
7.99
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGCTGACAAAGCTGCTTTCCTCATGGGCATTAACTCCTCTGAGTTGGTAAAGTGCTTGATCCATCCTAGAATCAAAGTTGGTAACGAATATGTTACCAGAGGTCAAACTATAGAACAG
Seq A exon
GTAACCTGTGCTGTCGGTGCCCTGTCCAAGTCAATGTATGAAAGGATGTTTAAGTGGCTAGTGGCACGGATCAACAGGGCCCTGGATGCCAAGCTGTCAAGGCAGTTCTTCATTGGCATTCTTGACATCACTGGTTTTGAAATCCTTGAG
Seq C2 exon
TATAATAGCCTTGAGCAACTTTGCATTAATTTTACCAATGAAAAATTACAACAATTCTTCAATTGGCACATGTTTGTTCTGGAGCAAGAGGAATATAAGAAAGAAAGCATTGAATGGGTGTCTATTGGCTTTGGTCTGGATTTGCAAGCTTGCATAGATCTCATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821-'12-13,'12-12,13-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
PF0006316=Myosin_head=FE(7.3=100)
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGCTTTCCTCATGGGC
R:
TGCAAATCCAGACCAAAGCCA
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)