DreEX6091842 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24968515-24969292:-
Coord C1 exon
chr11:24969174-24969292
Coord A exon
chr11:24968776-24968925
Coord C2 exon
chr11:24968515-24968685
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACATTGTGTGGCTCCACCAGGTT
3' ss Score
7.28
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGCTGATAAGGCTTCCTACCTGATGGGCGTTAGCTCAGCAGACCTTATAAAAGGTCTTCTGCACCCTAGAGTGAAGGTGGGCAATGAGTATGTGGTTAAAGGACAGAATGTGGAACAG
Seq A exon
GTTAACTATGCTGTTGGAGCTCTGGCCAAAGCCACTTACGACCGCATGTTCAAGTGGTTGGTGGGGCGTATAAATAGGACGCTCTACACTGCTCTGCCACGCCAGTTCTTTATCGGAGTGCTGGACATCGCCGGCTTTGAGATCTTTGAG
Seq C2 exon
CTCAACAGCTTCGAGCAGCTCTGCATCAACTTCACCAATGAAAAACTGCAACAGTTTTTCAACCATCACATGTTCATCCTGGAACAAGAGGAGTACAAACGGGAAGGCATCGAGTGGACCTTTATTGACTTTGGGCTTGACCTCCAAGCCTGCATTGACCTTATTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTAGCTCAGCAGACCTTA
R:
AAGGTCAATGCAGGCTTGGAG
Band lengths:
254-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]