BtaEX6066271 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64897995-64898700:+
Coord C1 exon
chr13:64897995-64898113
Coord A exon
chr13:64898198-64898347
Coord C2 exon
chr13:64898530-64898700
Length
150 bp
Sequences
Splice sites
3' ss Seq
CAGCCTCCCCACGACTCCAGGTG
3' ss Score
6.3
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
GTGCTGACAAGGCTGCCTACCTGATGGGGGTCAGCAGCGGGGACCTCCTCAAAGGTCTTCTGCACCCCCGAGTGCGTGTGGGGAATGAATATGTGACCAAGGGTCAGAGCGTGGAGCAG
Seq A exon
GTGGTGTTTGCCGTGGGGGCTCTGGCCAAGGCCACCTACGACCGGCTGTTCCGATGGCTGGTGTCTCGGATCAACCAGACGCTGGACACCAAGCTGCCCCGTCAATTCTTCATCGGCGTCCTGGACATTGCGGGTTTTGAGATCTTTGAG
Seq C2 exon
TTTAACAGCTTCGAACAGCTGTGTATCAACTTCACCAACGAGAAGCTGCAGCAGTTCTTCAACCAGCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATTGACTGGGTCTTCATCGACTTCGGCCTGGACCTGCAGCCCTGCATCGACCTCATCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512-'17-17,'17-15,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(7.2=100)
C2:
PF0006316=Myosin_head=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAGGCTGCCTACCTGAT
R:
CAGGCCGAAGTCGATGAAGAC
Band lengths:
253-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]