MmuEX6106236 @ mm10
Exon Skipping
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155620781-155621436:+
Coord C1 exon
chr2:155620781-155620899
Coord A exon
chr2:155620992-155621141
Coord C2 exon
chr2:155621266-155621436
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTGCCGCCCTGTATCCACAGGTG
3' ss Score
11.88
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGCGGACAAGGCTGCCTACTTGATGGGTGTCAGCAGCGGGGACCTCCTCAAAGGTCTCCTGCATCCCCGGGTTCGTGTGGGAAATGAGTATGTTACCAAGGGCCAGAGTGTGGAGCAG
Seq A exon
GTGGTATTTGCCGTGGGGGCCCTGGCCAAGGCTACCTACGACCGGTTGTTCCGATGGCTGGTTTCTCGAATCAATCAGACCCTGGACACAAAGCTCCCTCGACAGTTCTTTATCGGGGTCCTGGACATCGCTGGTTTTGAGATTTTTGAG
Seq C2 exon
TTTAACAGCTTCGAGCAGCTGTGCATCAACTTCACCAACGAGAAGCTGCAGCAGTTCTTCAACCAGCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATCGACTGGGTCTTCATCGACTTCGGCCTTGACCTGCAGCCTTGTATCGACCTCATCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-'11-25,'11-14,22-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACTTGATGGGTGTCAGC
R:
GTCAAGGCCGAAGTCGATGAA
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types