GgaEX6022717 @ galGal3
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2601445-2602992:-
Coord C1 exon
chr20:2602874-2602992
Coord A exon
chr20:2601952-2602101
Coord C2 exon
chr20:2601445-2601615
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTCTGGTTTCCTTTGGCAGGTT
3' ss Score
9.61
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTGCTGACAAAGCTGCCTACCTCATGGGGATCAGCTCAGCTGACCTCATCAAGGGCTTGCTCCATCCTCGTGTGAAAGTGGGCAATGAGTACGTGACCAAAGGTCAGAACGTGGAGCAG
Seq A exon
GTTGTCTATGCTGTGGGAGCCCTGGCTAAAGCCACTTACGATCGTATGTTCAAGTGGCTGGTGACTCGGATCAACAAGACCCTGGACACCAAGCTGGCCAGGCAGTTCTTCATCGGAGTACTGGACATTGCAGGCTTCGAGATCTTTGAT
Seq C2 exon
TTCAACAGCTTTGAACAACTGTGCATCAACTTTACTAATGAGAAGTTGCAGCAGTTCTTCAACCACCACATGTTTGTCCTGGAGCAAGAAGAATACAAGAAGGAAGGCATCGAATGGGTCTTCATTGACTTTGGCCTGGACCTACAGGCTTGCATTGACCTGATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(8.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCTGCCTACCTCATGGG
R:
TGTAGGTCCAGGCCAAAGTCA
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]